Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05938 ATGGGCGGTTGTTGCTGTTGTGCTTCTAAGGAGACTGTGTTGAGTGCTCCACCTGCTTACTATTATTATCCAAGAGCATCAGATGAGCATGTTCCCCTATCTTCTCATCAAGGTGCTCCCACTGCTTTCTCTGGAAGGCTCTTGGTTGATACTAATCTAGATACTTCGAGTCCTGATACTTATACACCACCTCCTGCTCCTATCCCTTTCAATGTGACACTTGATGCCACTCAGACTGCACCTGTGACTCAAGAAATTTGCGACAAGAACAATACAAATTCTAATTCAGTTCAAGAACCATCTGGAGACAATCACGGAACCTCACCTAAGTCAGAAGAACTGAAAGAATCAGAATGCAAAGGTCAGACTGATTTAGAATTAGACTCGGCAAAGGATTCTGAAATTGAACTTTCAAAGTTGGGTGAGCCTATAGATTTAGTAGAAGAAGACGAAGGATGCCCGATATGTTTAGAAGAATATGACGATGAGAATCCAAAACTCACCACAAAATGTGATCATCACTATCACCTTGCTTGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGCCCTGTCTGTGCTCAGGCCTTGGTTTTCAGCCCTCCCATTGAATAG 615 0.4276 MGGCCCCASKETVLSAPPAYYYYPRASDEHVPLSSHQGAPTAFSGRLLVDTNLDTSSPDTYTPPPAPIPFNVTLDATQTAPVTQEICDKNNTNSNSVQEPSGDNHGTSPKSEELKESECKGQTDLELDSAKDSEIELSKLGEPIDLVEEDEGCPICLEEYDDENPKLTTKCDHHYHLACILEWMERSETCPVCAQALVFSPPIE 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05938 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 198 IPR013083 -
Vivi5g05938 204 ProSiteProfiles Zinc finger RING-type profile. 153 193 IPR001841 -
Vivi5g05938 204 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 40 200 - -
Vivi5g05938 204 Pfam Ring finger domain 153 193 IPR001841 -
Vivi5g05938 204 SMART ring_2 153 193 IPR001841 -
Vivi5g05938 204 SUPERFAMILY RING/U-box 147 200 - -
Vivi5g05938 204 MobiDBLite consensus disorder prediction 87 132 - -
Vivi5g05938 204 MobiDBLite consensus disorder prediction 106 132 - -
Vivi5g05938 204 MobiDBLite consensus disorder prediction 87 105 - -
Vivi5g05938 204 FunFam Putative E3 ubiquitin-protein ligase RHB1A 130 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05938 Vivi-Chr5 163607591 163610757 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05938 1 199 C3H Transcription Factor Family AT5G41350 50.952 2.97e-61 188