Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05937 ATGGCAAACGGGTCTTCCGTTGATCGTATTGAAGCTGAAACTTTTGCTGATTTTCGTGGTAATGGTGGTTGTGTGGTAGAGGGTCGTGCTGATAGCGGTGATTTTGACAAAGCGAAACAGAAATCTTTGTTTTGTCAAATTTTTTCGGTTTACCTTAAGGAGGATTGTGGTAGAGGCATTGTGAGGCCTGTTCCGGTGATACTTGGAGATGGTATATCGGTTGATTTATACCAACTTTTTTCCCTTGTGAAGGAAAACGGCGGGTATGATGACGTATCGAGAAAAGGGCTGTGGGATTCTGTCATTGTTGAGCTGGGTTTGGAATATCAGTTTTTGGCTTCGATTAAATTGATTTATGATAAATATCTGATTGGTTTCGAAGGCTGGCTCGCGAAAACTTTCAATCTGGAGAAAGAATTCCGAAGCCTTTTGTGCTCGAATCTAAAGGACAAACATGATCGTTTTGTCCCATTTAAATCGAGTACTATCATCAAGCATATTGATTTGGTTAATCAAAAGATTGATGGTAGTGATGATGATGATAAAATGTTAACTGATCCTGTTAAGGAGGAGGATGACTGTTGCATGGAAATTTCTGCCGAGGAATTTAATTCTCGCAAACGTAAGCGAGAAGCATTATCTGGATTGGTACACTGGACGAGGCATATTGCAAAAGATCCCTTTGATCCTGCAGTCAAACCATTACCAGAACCTTCAAAGTGGAAGAACTATAAAGAAGGCGAGGACTTTTTCCTTCAATTGCTGAAGGCAAGAGACATTCTCTCGGTGAGAAAGCATGCTGAACCAAGTAGTGGATCATCTTCCCAGAAGGTGAAGATGCATCCTGCCATGTACGAGGATCGTGTTCTTGATCGCCAAAGTTCAAAGAAATTGAGATGTAGTGAAAGGCTTCCCGTCTCTGTTAAATCTCGCTGCAGTTGCTGCAGTTCATGTTCTGGTAATGGAAATAAATGTTCTCTGGAGAAAACATCTCCCAAACGAGACGGTGTGTCTGAAAAGAAAAAATCTGCTGCCAAACCGAATGTCACCGAAAAGAAAAAATCAACTGCCAAACCAGATGTAACCGAAAAGAAAAAATCAACTGCCAAACCAGATGTAACCGAAAAGAAAAAATCAACTGCCAAACCAGATGTAACCGAAAAGAAAAAATCAACTGCCAAACCAGATGTAACTGAAAAGGAAAAATCAACTGCCAAACCAGATGTAGCAATAAAGGAAAAAGCTGACCCAACTAGTGACGATTCTCGTGAAAAGAGTGTTTCTATCGGTCATCGTTTCCAAGCGGAGGTCCCGGAATGGACTGGTGTAGCTTCTGAGAGTGACTCTAAATGGTTAGGCACACAAGTATGGCCTGTTAAAGATGACTCAAAAGCTACTACTGAAACAGATCTTGCTGGGAGAGGAAGACGAGGAAAGTGCAGCTGCAACGTTCAAGGTTCTGTTGACTGTGTTAGATTTCATATTGCCGAAAACAGGATGAAACTGAAGCTTGAATTGGGTTCTGTATTTTACCGATGGGGATTTGACCAAATGGGCGAGGAAGTTTCACTTCGATGGACTGCTGAAGAAGAAAAGAAATTTAAGGATGCAATGGGGTTAAATATCCCCTCACAAAACAAGTCTTTTTGGAACAAGCCATCGAAATACTTTCAAAAGAAGACAAGAAAAGACATGGTGAACTATTACTTCAATGTATATCTTATTCAACTGAGAAGCTATCAGAATCGTGTGACTCCGGATACTGTTGACAGCGATGACGATGAAGTCGAATTTGGATCTTTTGGTGATGGATTTGGGAGAAAAGCTATCAAGCATCCATATATGGAGTTTATGGAGTGTTCAGTGAACACGCAGTGCTTTGATTTTGAGTAG 1893 0.4094 MANGSSVDRIEAETFADFRGNGGCVVEGRADSGDFDKAKQKSLFCQIFSVYLKEDCGRGIVRPVPVILGDGISVDLYQLFSLVKENGGYDDVSRKGLWDSVIVELGLEYQFLASIKLIYDKYLIGFEGWLAKTFNLEKEFRSLLCSNLKDKHDRFVPFKSSTIIKHIDLVNQKIDGSDDDDKMLTDPVKEEDDCCMEISAEEFNSRKRKREALSGLVHWTRHIAKDPFDPAVKPLPEPSKWKNYKEGEDFFLQLLKARDILSVRKHAEPSSGSSSQKVKMHPAMYEDRVLDRQSSKKLRCSERLPVSVKSRCSCCSSCSGNGNKCSLEKTSPKRDGVSEKKKSAAKPNVTEKKKSTAKPDVTEKKKSTAKPDVTEKKKSTAKPDVTEKKKSTAKPDVTEKEKSTAKPDVAIKEKADPTSDDSREKSVSIGHRFQAEVPEWTGVASESDSKWLGTQVWPVKDDSKATTETDLAGRGRRGKCSCNVQGSVDCVRFHIAENRMKLKLELGSVFYRWGFDQMGEEVSLRWTAEEEKKFKDAMGLNIPSQNKSFWNKPSKYFQKKTRKDMVNYYFNVYLIQLRSYQNRVTPDTVDSDDDEVEFGSFGDGFGRKAIKHPYMEFMECSVNTQCFDFE 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05937 630 ProSiteProfiles ARID domain profile. 38 131 IPR001606 GO:0003677
Vivi5g05937 630 SMART ELM2_2 427 477 IPR000949 -
Vivi5g05937 630 MobiDBLite consensus disorder prediction 311 327 - -
Vivi5g05937 630 Gene3D - 29 139 IPR036431 GO:0003677
Vivi5g05937 630 SMART ARID_2 35 127 - -
Vivi5g05937 630 SUPERFAMILY ARID-like 38 130 IPR036431 GO:0003677
Vivi5g05937 630 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 35 619 - -
Vivi5g05937 630 MobiDBLite consensus disorder prediction 311 427 - -
Vivi5g05937 630 Pfam ARID/BRIGHT DNA binding domain 58 127 IPR001606 GO:0003677
Vivi5g05937 630 MobiDBLite consensus disorder prediction 328 427 - -
Vivi5g05937 630 CDD SANT 525 572 IPR001005 -
Vivi5g05937 630 SMART bright_3 39 132 IPR001606 GO:0003677
Vivi5g05937 630 CDD ARID 58 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05937 Vivi-Chr5 163592836 163597851 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi5g05937 ARID 3.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05937 - - vvo:131603654 1267.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02746 6 112588264 112593457 Vivi5g05937 5 163592836 163597851 PCT