Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05936 ATGGCAAATGAGTCTTCTCTTGATCGCGTTGAAGCTGAAACTCTTACTGATTTTCATGGAAACAGCAGTTGTCTTGTCGAGGATCGTGTGGATAGTACTGATCATGACAAAACTAAACAAAAATCTTTGTTTTGTCAATTTTTTTCGGTTTACCTAAAGGAGAATTGTAGTAGAGGTAATTTGAGGCCTGTGCCGGTGACACTTGGTGATGGTCAGTTGCTTGATTTATACCATCTATTTTCCCTTGTGAAGGAAAATGGTGGGTATGATGCGGTATCAAGAAAAGGGTTGTGGGATTTTGTCTTAGTTGAACTGGGTTTGAATCTTCATGTTTTGGCTTTGGTAAAATTAGTTTACGAAAAATATCTTAACGATTTTGAAGGCTGGCTCAGCAATACTTTTAAGGGTAATGCCGCCTCTTGCTTGGAAATATCTGCAGAGGATTTTAATTCTCGCAAACGTGAACTAGAATCATCATTTGGAATGGTAACCTGGACGAGGCATATTGCAAAACATCCGCTTGATCCTGCAGCTAAACTGTTACCAGAACCTTCAAAATGGGAAGAAAGAGACATTCTCTCGATGAGAAAACATGTAGAACTAAACCGTGGATCATCTTCCCAGAAGGTGAAGATGCATTCTGCCATGTATGAAGATCCTGTTGCTCTTAGTCATCAAGGTACAAAGAAATTGAGAAGTAGTAAAAGGCTTCGAAGCCCTGGTAATAGAAATAAATGCCTTCTGGACAAAAATACTGCTAAACCAGATGTAGCTGAAAAGAAAAAATTTATGTCATCTTTGGGTGGTTTCCATGAAACGAGTGTTCCTATAGGATCTCATTTCCAAGTGGAAGTCCCGGAATGGACTGGTGTAGCTTCTGAGAGTGACCCTAAATGGTTGGGCACACAAGTATGGCCTGTTAAAGATGACTCAAAACCTACTACTGAAACAGATCTTGTTGGGAGAGGAAGACGAGGAAAGTGTAGCTGCAATGTTCGAGGTTCTGTTGACTGTGTCAGATTTCATATTGCTGGAAACAGGATGAAACTGAAGCATGAATTGCGTTCTGTATTTTACCTATGGGGATTTGATCGAATGGGCGAGGGAGTTTCACTTCAGTGGACAGCGGAAGAAGAAAAGAAATTTAAGGATTTAATGAGGTTAAATATCCCCTCCGATAACAAGGATTATTGGATTGATTTTTGGAACAATACATCCGAAGAATTTCAAATGAAGACAAGAAAAGACCTGGTGAACTATTACTTAAATGTATATCTTGTGCAGCAAAGAAGCTATCAGAATCGTGTGACTCCAAAGACTGCTGACAGCGATGACGGCGAAGTCAAATTTGGATCTTTTGGTGATGGATTTGGGAGAAAAGCTATCAAGCATCGATCTTTGGAGTTCATGGAGTGCTCAGAGAACACACAGTGCTTTGATTTTGAGTAG 1449 0.3996 MANESSLDRVEAETLTDFHGNSSCLVEDRVDSTDHDKTKQKSLFCQFFSVYLKENCSRGNLRPVPVTLGDGQLLDLYHLFSLVKENGGYDAVSRKGLWDFVLVELGLNLHVLALVKLVYEKYLNDFEGWLSNTFKGNAASCLEISAEDFNSRKRELESSFGMVTWTRHIAKHPLDPAAKLLPEPSKWEERDILSMRKHVELNRGSSSQKVKMHSAMYEDPVALSHQGTKKLRSSKRLRSPGNRNKCLLDKNTAKPDVAEKKKFMSSLGGFHETSVPIGSHFQVEVPEWTGVASESDPKWLGTQVWPVKDDSKPTTETDLVGRGRRGKCSCNVRGSVDCVRFHIAGNRMKLKHELRSVFYLWGFDRMGEGVSLQWTAEEEKKFKDLMRLNIPSDNKDYWIDFWNNTSEEFQMKTRKDLVNYYLNVYLVQQRSYQNRVTPKTADSDDGEVKFGSFGDGFGRKAIKHRSLEFMECSENTQCFDFE 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05936 482 Gene3D - 23 139 IPR036431 GO:0003677
Vivi5g05936 482 MobiDBLite consensus disorder prediction 222 248 - -
Vivi5g05936 482 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 31 477 - -
Vivi5g05936 482 CDD SANT 374 424 IPR001005 -
Vivi5g05936 482 SMART ARID_2 35 127 - -
Vivi5g05936 482 ProSiteProfiles ARID domain profile. 38 131 IPR001606 GO:0003677
Vivi5g05936 482 SUPERFAMILY ARID-like 46 132 IPR036431 GO:0003677
Vivi5g05936 482 CDD ARID 57 127 - -
Vivi5g05936 482 SMART bright_3 39 132 IPR001606 GO:0003677
Vivi5g05936 482 Pfam ARID/BRIGHT DNA binding domain 51 127 IPR001606 GO:0003677
Vivi5g05936 482 SMART ELM2_2 275 325 IPR000949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05936 Vivi-Chr5 163577526 163582942 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi5g05936 ARID 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05936 - - vvo:131603651 996.497