Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05907 ATGGTGCTGCAAAACATGAAGGAACAACTTGCTTTGGCAATTAGAAGCATCCAATGGAGCTATATAATCTTCTGGTCTGAATCTGTTAATCATCCAGGGGTGTTGAGTTGGGGGGGAGGATATTACAATGGAGATATTAAGACAAGGAAAACAAGTCAAGGAGTGGAACTTAGTTCCGACGAAATCGGCTTACAGAGGAGTGAGCAACTGAGAGAGCTGTTTGGGACTCTGAAACCTGTAGAAACAAGTCCTCAAACAAAAAGGCCTTCTGCAGCACTGTCACCAGAAGATCTCTCAGATACTGAGTGGTATTATTTGGTTTGCATGTCCTTTGTATTCAACATTGGCCAAGGGTTACCAGGAAGAGCTCTAGCGAATGGCCAACCAATTTGGCTGATCAATGCTTATTCTACTGATTGCAAAGTGTTTAGTCGCGCTCTTCTCGCAAAGAGTGCATCTATTCAAACAGTGGTGTGCTTTCCTTTTATGAATGGTGTTATTGAGCTAGGCACAACTGATCTGGTATTGGAAGATCTGAGTCTCATTCAACAGATCAAAACTTCTTTATCGAATATTATAACTGTCGACGATCCTATTAACGTTCAAGCTACATTGAATTCGAGAAATAACGAAGATGTTGCTTGTGTGGCAGCATTTGGTCATTATGACTATAATGCTGGATATGACATAATGAATAGAACAACCTCTCCTAATGGTAGTTCAACTGCATTACAAACGAATCAAATACCAGACGAAACATTCATGGTCGAAAACTGGCACGTAATGGAAGATGATTTGAGCAACTGTGTCCATAACTCCATGAATTCAAGTGACTGCATATCTCAAACTATTGCTTCTGCTCCTAAGGGTAGAGAAGATTGCAACAATATGGACCCCTTAAGTGAGGATTGGCACTATCAGAAAATTCTTGCAGCACTTTTGAAAAGCAATGAAGAGTTATCAATGGGGATGCATTTTCAAAACTTTCATCAGGAATCAAGCTTTTGTGTTTGGAACAAAGGAGGGCCATGGCCATTGGATTGCCATAGGCCAAGACAAGGAACGTCGCAAAAGCTATTGAAGAAGATCTTGTTCGAGGTTCCGCGGATGCATATGGATGGTTTGGTTGAATCTCAAGAAGAGAATGACTATAGAGAGGGAACGAGACTCGAGACTGATGAAGGTATGAACCATGTTTTGTCAGAAAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGATCAATGGTCCCTTCAAATAGTAAGGATGACAAAGTTTCTATACTAGACGACGCAATTGAATACCTTAGAAAGCTTGAGAAAAGGGTAAAAGAAATGGAAGGTCAAAGAGAGCCGACAGATATAGAGTCTAGAAACAAAAGAACACATCATGATATGGTAGAGAGAACTACTGATCATTACTATAATAAAACTAACAATGGCAAGAAACCAATGGCGAAAAAGAGGAAAATATGCGACATAGACGAGACGAGGAGAGTGATTTACTCAGATGCTTTGAAAGGAAGTTCTACTAGTGATGTTAGTGTCAAAATGAGTGACAATGGAGTTGTGATTGAAATGAAATGCCCTTGTAGATCAGGAAGGATGTTGGAAATTATGGAAGCAGTTAACAATCTCAACATAGATTTGAATTCAGTTCAATCAACAGAAGCTGATGGGAGTCTTCATCTGATCATTAAATCTAAGTTTACAGGATCAAGTCATGCAACAGCAAAAAGGATCAAGCAAGTCCTCCTTAAAGTGGCTTCAAAGTTTTGA 1788 0.396 MVLQNMKEQLALAIRSIQWSYIIFWSESVNHPGVLSWGGGYYNGDIKTRKTSQGVELSSDEIGLQRSEQLRELFGTLKPVETSPQTKRPSAALSPEDLSDTEWYYLVCMSFVFNIGQGLPGRALANGQPIWLINAYSTDCKVFSRALLAKSASIQTVVCFPFMNGVIELGTTDLVLEDLSLIQQIKTSLSNIITVDDPINVQATLNSRNNEDVACVAAFGHYDYNAGYDIMNRTTSPNGSSTALQTNQIPDETFMVENWHVMEDDLSNCVHNSMNSSDCISQTIASAPKGREDCNNMDPLSEDWHYQKILAALLKSNEELSMGMHFQNFHQESSFCVWNKGGPWPLDCHRPRQGTSQKLLKKILFEVPRMHMDGLVESQEENDYREGTRLETDEGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLRKLEKRVKEMEGQREPTDIESRNKRTHHDMVERTTDHYYNKTNNGKKPMAKKRKICDIDETRRVIYSDALKGSSTSDVSVKMSDNGVVIEMKCPCRSGRMLEIMEAVNNLNIDLNSVQSTEADGSLHLIIKSKFTGSSHATAKRIKQVLLKVASKF 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05907 595 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 393 442 IPR011598 GO:0046983
Vivi5g05907 595 Gene3D - 391 454 IPR036638 GO:0046983
Vivi5g05907 595 PANTHER TRANSCRIPTION FACTOR TT8 4 593 - -
Vivi5g05907 595 SMART finulus 399 448 IPR011598 GO:0046983
Vivi5g05907 595 Coils Coil 432 452 - -
Vivi5g05907 595 Pfam Helix-loop-helix DNA-binding domain 397 443 IPR011598 GO:0046983
Vivi5g05907 595 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 187 IPR025610 -
Vivi5g05907 595 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 396 456 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05907 Vivi-Chr5 163284014 163287556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05907 2 592 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 42.527 1.42e-156 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi5g05907 bHLH-MYC_N 2.4e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05907 - - gmx:100808167 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05907 5 163284014 163287556 Vivi5g05907 5 163284014 163287556 ECH