Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05891 ATGGGTTGTAAGTTTTCAAAATATTCAACATGCTGTTGGGGTAGTGAGCAAAGTGGTGGTGGTGGTGGTGTTCAGGTTCCCGGGGCGAATATTGATGAAAATGAAAACAATAATATTGAGGGAAATGGCTCGCTGTCGTTTCGTGAATATACGATTGATCAGCTTAGGAAGGCCACCTCTGGGTTTGCGGTAGATAATATTGTTTCTGAGCATGGAGAAAAGGCTCCAAATGTTGTTTTTAAAGGGAAACTTGAAAATCAAACGCGAATTGCCATCAAACGGTTCAATAAATCAGCCTGGCCAGACGCCCATCAATTTTTGGAAGAGGCCAAAGCTGTTGGTCAGCTAAGGAGCCCAAAATTGGCAAATCTGCTTGGATGTTGCTCTGAAGGTGATGAGAGGTTGCTTGTATCAGAATATATGTCCAATGATACTTTGGCAAAGCACTTGTTCCATTGGGAAACTCAGCCCATGAAATGGGCAATGCGACTTAGAGTTGCTTTATACCTTGCCCAAGCTCTAGAGTACTGTACCAACAAAGGACGGGCTCTATATCATGATCTAAATGCTTACAGAGTTCTTTTTGATGATGACTTCAATCCTAAACTTTCATGCTTCGGTTTGATGAAAAACAGTCGAGATGGGAAAAGTTATAGTACGAATTTGGCATTTACACCACCTGAATACCTCAGGACAGGTAGAGTGACCCCAGAGAGTGTAACTTATAGCTTTGGGACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATGCCCTTGACCTGATCAGGGACAGGAACCTTCAGAGTCTAACAGACTCATGTTTAGAAGGACAATTTTCAGATGACGAGGGGACTGAATTAGTTCGTCTAGCCTCACGATGTTTACAATCTGAACCGCGAGAGCGTCCTAATCCAAGGTCACTGGTCACTGCTCTAATACCTTTACAAAAGGATTCTGAGGTCCCTTCTCATGTGCTGATGGGTATACCTGATGCCGATGGTAGTGCCGCTTTTCCCCTTACTCCACTTGGGGAAGCTTGTCTACGCAGGGATCTGACATCCCTACACGAGGTGCTGGAGAAAATAGGGTATAAAGATGACGAGGGTGCAGCTACGGAGCTTTCGTTCCAAATGTGGACCAACCAGATGCAGCAAACATTAGACTCGAAGAAGAAAGGAGATGCCGCTTTTCGGCAGAAGGACTTCAAAAATGCAATCGATGGCTACACCCAGTTTATTGAAGTTGGAAGCATGACTTCTCCAACAATTTACGCGCGCCGTAGTCTGTCGTATCTCTTCAGCAACATGCCAAATGAAGCACTTGGTGATGCAATGCAGGTGCAAATGATATCTCCTATTTGGCACCTCGCATTTTATTTACAAGCTGTTGCTCTTTTGGCACTGGGAAGGAAGAATGAAGCCCAAGTGGCACTTAAAGAAGGTTCTTCACTTGAAACTAATAAGAGCACAAATTAA 1488 0.4415 MGCKFSKYSTCCWGSEQSGGGGGVQVPGANIDENENNNIEGNGSLSFREYTIDQLRKATSGFAVDNIVSEHGEKAPNVVFKGKLENQTRIAIKRFNKSAWPDAHQFLEEAKAVGQLRSPKLANLLGCCSEGDERLLVSEYMSNDTLAKHLFHWETQPMKWAMRLRVALYLAQALEYCTNKGRALYHDLNAYRVLFDDDFNPKLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQSLTDSCLEGQFSDDEGTELVRLASRCLQSEPRERPNPRSLVTALIPLQKDSEVPSHVLMGIPDADGSAAFPLTPLGEACLRRDLTSLHEVLEKIGYKDDEGAATELSFQMWTNQMQQTLDSKKKGDAAFRQKDFKNAIDGYTQFIEVGSMTSPTIYARRSLSYLFSNMPNEALGDAMQVQMISPIWHLAFYLQAVALLALGRKNEAQVALKEGSSLETNKSTN 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05891 495 FunFam probable serine/threonine-protein kinase At4g35230 388 495 - -
Vivi5g05891 495 SUPERFAMILY TPR-like 392 492 IPR011990 GO:0005515
Vivi5g05891 495 Gene3D Tetratricopeptide repeat domain 387 495 IPR011990 GO:0005515
Vivi5g05891 495 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 33 493 IPR045845 GO:0004672|GO:0009742
Vivi5g05891 495 ProSiteProfiles Protein kinase domain profile. 65 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05891 495 Pfam Protein tyrosine and serine/threonine kinase 79 315 IPR001245 GO:0004672|GO:0006468
Vivi5g05891 495 FunFam probable serine/threonine-protein kinase At5g41260 142 333 - -
Vivi5g05891 495 SUPERFAMILY Protein kinase-like (PK-like) 37 325 IPR011009 -
Vivi5g05891 495 Gene3D Phosphorylase Kinase; domain 1 36 140 - -
Vivi5g05891 495 FunFam probable serine/threonine-protein kinase At4g35230 37 140 - -
Vivi5g05891 495 Gene3D Transferase(Phosphotransferase) domain 1 142 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05891 Vivi-Chr5 163130774 163138222 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05891 50 322 Receptor kinase-like Gene Family AT3G58690 32.886 8.62e-42 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vivi5g05891 PK_Tyr_Ser-Thr 5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05891 K14500 - gmx:100797107 801.586