Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05888 ATGGATGGTAGAGAGGCTATGGCATTCCCTGGTGGTCCTGGTTCGTATTACATGCATAGAGGAGGGGTTGAGGCTGCAGGGTCTGGCTCTGGTGGGTTCCAAGTACCTCCTGGATTTAGAGCTTTGCCAAACAATGGTATTATAGGTCAGCAAAATGTTAGGGCTCAGGGTGGTAATGGTGATACTAGTTCTATGTTTTCGTCGGAGCCTCAGTCTCAGGCTGATTTTAATCATGATGTTAGCGTTGGTGCATCTTCCGGGGTGCCTTTGACTGAGCCTGTGAAAAAGAAAAGAGGGAGACCGAGGAAATATGGACCTGATGGATCGGTTTCTTTGAAACTGACTCCAATGTCTGCCCCCGCTAATTCCACTCAAGATTTGGGTACACCTTCTGAGAAACGGGGTAGAGGACGGCCTCGTGGATCTGGAAGGAAGCAACAGCTGGCTGCATTAGGTGATTGGATGACCAGTTCCGCAGGGTTGGCTTTTTCGCCTCATGTTATCACCATTGCAGCTGGCGAGGACATTGCAGCAAAACTATTGTCTTTATCACAGCAGAGACCAAGGGCTCTGTGTATCTTGTCAGGCACTGGGATAGCTTCTCAAGTTACTCTACGACAGCCCGCTTCTACCAATGCCGGTGTAACTTATGAGGGAAAATTCCAAATATTAAGCTTATCCGGTTCTTATTTGGTTGCTGAAGAGGGTGGACCAACCAACAGAACGGGTGGCATAAGTGTTTCTCTTTCTAGCCGTGATGGTCATGTTATTGGTGGCAGTGTTGCTGTGCTTATTGCTGGAAGCCCGGTGCAGTTGGTTGTGTGCAGTTTCGTATATGGTGGTGGCTCGAAGGTAAAGACCAAGCAAGGAACGGTTACCAATGGGGAGAGTTCTGAGCCTCATAATGATAACCTAGGTTCTCCAGCCAGTGCTCCACCTGGTCAAAACTACATCTCTTCACCAACAAGCATGTGGCCGGGATCACAACCATCGGACCTGAAAAGTGTGCCCGCACATACCGGCATTGACTTGACGCGAGGGTGA 1044 0.4923 MDGREAMAFPGGPGSYYMHRGGVEAAGSGSGGFQVPPGFRALPNNGIIGQQNVRAQGGNGDTSSMFSSEPQSQADFNHDVSVGASSGVPLTEPVKKKRGRPRKYGPDGSVSLKLTPMSAPANSTQDLGTPSEKRGRGRPRGSGRKQQLAALGDWMTSSAGLAFSPHVITIAAGEDIAAKLLSLSQQRPRALCILSGTGIASQVTLRQPASTNAGVTYEGKFQILSLSGSYLVAEEGGPTNRTGGISVSLSSRDGHVIGGSVAVLIAGSPVQLVVCSFVYGGGSKVKTKQGTVTNGESSEPHNDNLGSPASAPPGQNYISSPTSMWPGSQPSDLKSVPAHTGIDLTRG 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05888 347 SUPERFAMILY AF0104/ALDC/Ptd012-like 163 280 - -
Vivi5g05888 347 MobiDBLite consensus disorder prediction 45 80 - -
Vivi5g05888 347 ProSiteProfiles PPC domain profile profile. 157 299 IPR005175 -
Vivi5g05888 347 MobiDBLite consensus disorder prediction 286 347 - -
Vivi5g05888 347 CDD DUF296 165 277 IPR005175 -
Vivi5g05888 347 MobiDBLite consensus disorder prediction 115 130 - -
Vivi5g05888 347 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 66 322 IPR039605 GO:0003680
Vivi5g05888 347 MobiDBLite consensus disorder prediction 286 335 - -
Vivi5g05888 347 MobiDBLite consensus disorder prediction 1 147 - -
Vivi5g05888 347 Pfam Plants and Prokaryotes Conserved (PCC) domain 165 278 IPR005175 -
Vivi5g05888 347 Gene3D - 165 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05888 Vivi-Chr5 163113226 163116434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05888 1 347 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 46.234 3.94e-89 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05888 - - gmx:100813888 450.284