Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05868 ATGAAGTTGAGTACTTCATTTTTGTTTATGGGTTTGGTTTCTATGTTCTCTTTTGTTTCTTCTGCCATGGTGGCCACAAATGAAGTTTGGGCGCTTAAAGCCTTCAAAGAAGCTGTGTATGAAGATCCACATAAGGTTTTGTCCAATTGGAATACTTTGGATTCAGATCCTTGTGATTGGAATGGAGTTTCGTGCACCGGAACTCGAGATCATGTCATCAAGCTAAACATATCAGGAGCATTACTCAGAGGGTTTCTTGCTCCAGAAATCGGGAAAATAACCTACTTGCAAGAATTGATCTTGCATGGTAACAATCTCATTGGAATTATACCGAAAGAATTGAACGCGTTGAAATCTCTTAAGGTGTTGGATTTGGGAAAGAACCAGTTATCCGGACCAATTCCTCGAGAGATTGGAAATTTGACCGAAATCGTGAAAATAAATCTGCAGTCCAATGGTTTGACTGGTAGGTTACCTCCAGAGCTTGCAAATTTGAAATACCTTCAAGAACTTCGGCTCGATAGGAATAAGCTTGAAGGGCCTGTTCCTGCTGCCAGCACTTCAAATTTTTCTTCGAATATGCATGAAATGTATGCATCAAATGCGAATTCGACTGGCTTCTGTCGTTCGTCGCTTAAAGTTGCTGATTTTTCATATAACTTTTTGGTTGGTAGCATACCGAAATGTTTGGAGTATCTTCCAAGCTTTCAAGGGAATTGCCTCCATGTCAAAGACGTAAAACAGCGGACGAAAGTTCAATGTGCTGGAGCTTCAGCTGCTCAAGGCCATCCAGTAGTGAAACCGAAGCACCAATCTAAAGCCGAACATGTATCAAAGCATCAAGGAGGTTCAAAACCTGCTTGGCTTTTGGCTATAGAAATAGCGACCGGAACCATGGTTGGTTCTCTCATTCTGATTGGAATTTTCACTGCTGTTCAAAGGTGTAACAAAAAAGCATCCATCATTATTCCTTGGAAGAAATCTTCAAGCGAGAAAGAGCAAATTTCAGTATATATAGACTCGGAGATGTTGAAAGATGTCAGGAGGTATAACAGACAAGAGCTTGAGGTCGCTTGTGAAGATTTCAGCAACATAATCGGATCCTCACCGGATAGTGTTGTCTACAAAGGTACAATGAAAGGTGGACCTGAGATTGCCGCGATTTCCCTATGCATCAAAGAAGAGAATTGGACTGGACACCTTGAACTTTATTTTCAGAGAGAGGTGGCAGACTTGGCAAGGTTAAATCACGAAAACACAGGAAAACTACTAGGATATTGTAGAGAAAACGCTCCATTTACAAGAATGCTGGTTTTTGATTATGCATCAAATGGAACGCTTTATGAACACCTACATTGTTATGAAGAAGGGTTTCAGTTATCTTGGACACGACGTATGAAAATTATCATTGGCATTGCTCGTGGACTAAAGTATTTGCACACTGAAATTGATCCTCCATTCACTATCTCTGAGTTGAATTCAAACGCCGTATACCTTACAGAAGATTTTTCCCCCAAGTTGGTTGATTTTGAAAGTTGGAAGACAATTCTCGAAAGATCAGAGAAAAACTCCGGTTCCGTTAGCAGCCAAGGTGGTGTTAGTATTCCTCCAAACTCCCTTCGAGCGCGCTACCTTGATACCAAAGGAAACATATATGCTTTTGCAGTACTTGTACTTGAGATTATCAGTGGCAGATCTCCGTATTGCCAGGACAGAGGTTACTTGGTAGATTGGGCGAGAGATTATCTTGAAATGCCGGAAGTAATGTCATATTTAGTCGATTCCGAGTTGAAGCATTTCGGATACGATGATCTCAAAGTAATATGCGAGGTGATAACTCTCTGTATTAGTCCTGACCCTAATGTATGTCCATCAATGCAAGAATTATGCAGCATGCTGGAGAGCCGAATCGACACATCAATAAGTGTGGAGCTCAAATCTTTAGCTTGGGCTGAACTAGCACTTTCAACATAA 1974 0.4098 MKLSTSFLFMGLVSMFSFVSSAMVATNEVWALKAFKEAVYEDPHKVLSNWNTLDSDPCDWNGVSCTGTRDHVIKLNISGALLRGFLAPEIGKITYLQELILHGNNLIGIIPKELNALKSLKVLDLGKNQLSGPIPREIGNLTEIVKINLQSNGLTGRLPPELANLKYLQELRLDRNKLEGPVPAASTSNFSSNMHEMYASNANSTGFCRSSLKVADFSYNFLVGSIPKCLEYLPSFQGNCLHVKDVKQRTKVQCAGASAAQGHPVVKPKHQSKAEHVSKHQGGSKPAWLLAIEIATGTMVGSLILIGIFTAVQRCNKKASIIIPWKKSSSEKEQISVYIDSEMLKDVRRYNRQELEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAAISLCIKEENWTGHLELYFQREVADLARLNHENTGKLLGYCRENAPFTRMLVFDYASNGTLYEHLHCYEEGFQLSWTRRMKIIIGIARGLKYLHTEIDPPFTISELNSNAVYLTEDFSPKLVDFESWKTILERSEKNSGSVSSQGGVSIPPNSLRARYLDTKGNIYAFAVLVLEIISGRSPYCQDRGYLVDWARDYLEMPEVMSYLVDSELKHFGYDDLKVICEVITLCISPDPNVCPSMQELCSMLESRIDTSISVELKSLAWAELALST 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05868 657 SUPERFAMILY Protein kinase-like (PK-like) 338 634 IPR011009 -
Vivi5g05868 657 PANTHER PROTEIN MALE DISCOVERER 2 11 654 - -
Vivi5g05868 657 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Vivi5g05868 657 Gene3D Phosphorylase Kinase; domain 1 332 441 - -
Vivi5g05868 657 Gene3D Ribonuclease Inhibitor 25 254 IPR032675 -
Vivi5g05868 657 MobiDBLite consensus disorder prediction 261 280 - -
Vivi5g05868 657 SUPERFAMILY L domain-like 26 235 - -
Vivi5g05868 657 Gene3D Transferase(Phosphotransferase) domain 1 442 647 - -
Vivi5g05868 657 ProSiteProfiles Protein kinase domain profile. 360 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05868 657 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 188 - -
Vivi5g05868 657 Pfam Protein tyrosine and serine/threonine kinase 363 632 IPR001245 GO:0004672|GO:0006468
Vivi5g05868 657 FunFam Inactive receptor-like serine/threonine-protein kinase 334 441 - -
Vivi5g05868 657 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05868 Vivi-Chr5 162859287 162863552 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05868 41 638 Receptor kinase-like Gene Family AT5G45780 28.571 2.13e-56 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vivi5g05868 PK_Tyr_Ser-Thr 4.2e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05868 - - gmx:100779744 1074.31