Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05867 ATGAAGTTGAGTACTTCATTTTTGTTTATGGGTTTGGTTTCTATGTTCTCTTTTGTTTCTTCTGCCATGGTGGCCACAAATGAAGTTTGGGCGCTTAAAGCCTTCAAAGAAGCTGTGTATGAAGATCCACATAAGGTTTTGTCCAATTGGAATACTTTGGATTCAGATCCTTGTGATTGGAATGGAGTTTCGTGCACCGGAACTCGAGATCATGTCATCAAGCTAAACATATCAGGAGCATTACTCAGAGGGTTTCTTGCTCCAGAAATCGGGAAAATAACCTACTTGCAAGAATTGATCTTGCATGGTAACAATCTCATTGGAATTATACCGAAAGAATTGAACGCGTTGAAATCTCTTAAGGTGTTGGATTTGGGAAAGAACCAGTTATCCGGACCAATTCCTCGAGAGATTGGAAATTTGACCGAAATCGTGAAAATAAATCTGCAGTCCAATGGTTTGACTGGTAGGTTACCTCCAGAGCTTGCAAATTTGAAATACCTTCAAGAACTTCGGCTCGATAGGAATAAGCTTGAAGGGCCTGTTCCTGCTGCCAGCACTTCAAATTTTTCTTCGAATATGCATGAAATGTATGCATCAAATGCGAATTCGACTGGCTTCTGTCGTTCGTCGCTTAAAGTTGCTGATTTTTCATATAACTTTTTGGTTGGTAGCATACCGAAATGTTTGGAGTATCTTCCAAGGACTAGCTTTCAAGGGAATTGCCTCCATGTCAAAGACGTAAAACAGCGGACGAAAGTTCAATGTGCTGGAGCTTCAGCTGCTCAAGGCCATCCAGTAGTGAAACCGAAGCACCAATCTAAAGCCGAACATGTATCAAAGCATCAAGGAGGTTCAAAACCTGCTTGGCTTTTGGCTATAGAAATAGCGACCGGAACCATGGTTGGTTCTCTCATTCTGATTGGAATTTTCACTGCTGTTCAAAGGTGTAACAAAAAAGCATCCATCATTATTCCTTGGAAGAAATCTTCAAGCGAGAAAGAGCAAATTTCAGTATATATAGACTCGGAGATGTTGAAAGATGTCAGGAGGTATAACAGACAAGAGCTTGAGGTCGCTTGTGAAGATTTCAGCAACATAATCGGATCCTCACCGGATAGTGTTGTCTACAAAGGTACAATGAAAGGTGGACCTGAGATTGCCGCGATTTCCCTATGCATCAAAGAAGAGAATTGGACTGGACACCTTGAACTTTATTTTCAGAGAGAGGTGGCAGACTTGGCAAGGTTAAATCACGAAAACACAGGAAAACTACTAGGATATTGTAGAGAAAACGCTCCATTTACAAGAATGCTGGTTTTTGATTATGCATCAAATGGAACGCTTTATGAACACCTACATTGTTATGAAGAAGGGTTTCAGTTATCTTGGACACGACGTATGAAAATTATCATTGGCATTGCTCGTGGACTAAAGTATTTGCACACTGAAATTGATCCTCCATTCACTATCTCTGAGTTGAATTCAAACGCCGTATACCTTACAGAAGATTTTTCCCCCAAGTTGGTTGATTTTGAAAGTTGGAAGACAATTCTCGAAAGATCAGAGAAAAACTCCGGTTCCGTTAGCAGCCAAGGTGGTGTTAGTATTCCTCCAAACTCCCTTCGAGCGCGCTACCTTGATACCAAAGGAAACATATATGCTTTTGCAGTACTTGTACTTGAGATTATCAGTGGCAGATCTCCGTATTGCCAGGACAGAGGTTACTTGGTAGATTGGGCGAGAGATTATCTTGAAATGCCGGAAGTAATGTCATATTTAGTCGATTCCGAGTTGAAGCATTTCGGATACGATGATCTCAAAGTAATATGCGAGGTGATAACTCTCTGTATTAGTCCTGACCCTAATGTATGTCCATCAATGCAAGAATTATGCAGCATGCTGGAGAGCCGAATCGACACATCAATAAGTGTGGAGCTCAAATCTTTAGCTTGGGCTGAACTAGCACTTTCAACATAA 1980 0.4101 MKLSTSFLFMGLVSMFSFVSSAMVATNEVWALKAFKEAVYEDPHKVLSNWNTLDSDPCDWNGVSCTGTRDHVIKLNISGALLRGFLAPEIGKITYLQELILHGNNLIGIIPKELNALKSLKVLDLGKNQLSGPIPREIGNLTEIVKINLQSNGLTGRLPPELANLKYLQELRLDRNKLEGPVPAASTSNFSSNMHEMYASNANSTGFCRSSLKVADFSYNFLVGSIPKCLEYLPRTSFQGNCLHVKDVKQRTKVQCAGASAAQGHPVVKPKHQSKAEHVSKHQGGSKPAWLLAIEIATGTMVGSLILIGIFTAVQRCNKKASIIIPWKKSSSEKEQISVYIDSEMLKDVRRYNRQELEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAAISLCIKEENWTGHLELYFQREVADLARLNHENTGKLLGYCRENAPFTRMLVFDYASNGTLYEHLHCYEEGFQLSWTRRMKIIIGIARGLKYLHTEIDPPFTISELNSNAVYLTEDFSPKLVDFESWKTILERSEKNSGSVSSQGGVSIPPNSLRARYLDTKGNIYAFAVLVLEIISGRSPYCQDRGYLVDWARDYLEMPEVMSYLVDSELKHFGYDDLKVICEVITLCISPDPNVCPSMQELCSMLESRIDTSISVELKSLAWAELALST 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05867 659 ProSiteProfiles Protein kinase domain profile. 362 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05867 659 Gene3D Transferase(Phosphotransferase) domain 1 444 649 - -
Vivi5g05867 659 Pfam Protein tyrosine and serine/threonine kinase 365 634 IPR001245 GO:0004672|GO:0006468
Vivi5g05867 659 Gene3D Ribonuclease Inhibitor 25 253 IPR032675 -
Vivi5g05867 659 SUPERFAMILY Protein kinase-like (PK-like) 340 636 IPR011009 -
Vivi5g05867 659 Gene3D Phosphorylase Kinase; domain 1 334 443 - -
Vivi5g05867 659 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 188 - -
Vivi5g05867 659 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Vivi5g05867 659 PANTHER PROTEIN MALE DISCOVERER 2 11 656 - -
Vivi5g05867 659 FunFam Inactive receptor-like serine/threonine-protein kinase 336 443 - -
Vivi5g05867 659 SUPERFAMILY L domain-like 26 234 - -
Vivi5g05867 659 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05867 Vivi-Chr5 162859287 162863552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05867 41 640 Receptor kinase-like Gene Family AT5G45780 28.642 1.85e-55 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vivi5g05867 PK_Tyr_Ser-Thr 4.2e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05867 - - gmx:100779744 1081.63