Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05853 ATGGATCAACATGGGACCCAAAGTAATATTATAAGGCCAGTGTGGCTTAAGGAATTTCTTGGGGGTAATTTCTTTCAATCATGTTCTCTTCACCAAACACGTAGAAATGAGTTAAATAAGTATTGTATTTATTGCAATAAGTTATGCTGTCAATTTTGTGTATCTTTTGGTCTTCATCGCCATCATAAGATGCTTAAAGTGTCTAGACATGTTAACAAGGATGTTGTCTCCCAGCGTGCAATGGAGAAGTACTTTGATTGTTCCCAAATTCAGACATACAAAAGCAACAGGCGATTGGTTGTTTCTCTGAATCCTCTCGATCTCTTTGAGTTATCACCAAATGCTGAAGAATCATGCAAAGCTTGCAGCAAAAAGTTGAATGAACCTCATTTATATAGCTACTGCTCCATTTCTTGCAAGGTTGTAGCACTTTCGAAAAAGCCTGAACCTGAGGATCCTGCTAGCGTAATAATAATCGAGTCTTCCTCAGGACCTTCTAGCGGGAGTCCTCCTCATTCTCGTCCTCGTCCCTGTCCTCTTCTTCGGCAAACACAGGAGAGAGCTCCTGAACCTTCCAAAAGAAAAAGGAAAAGAAAGGGAAGCCCCCATAGAAGCCCCTTACAATAA 627 0.4083 MDQHGTQSNIIRPVWLKEFLGGNFFQSCSLHQTRRNELNKYCIYCNKLCCQFCVSFGLHRHHKMLKVSRHVNKDVVSQRAMEKYFDCSQIQTYKSNRRLVVSLNPLDLFELSPNAEESCKACSKKLNEPHLYSYCSISCKVVALSKKPEPEDPASVIIIESSSGPSSGSPPHSRPRPCPLLRQTQERAPEPSKRKRKRKGSPHRSPLQ 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05853 208 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 11 207 - -
Vivi5g05853 208 MobiDBLite consensus disorder prediction 156 208 - -
Vivi5g05853 208 MobiDBLite consensus disorder prediction 192 208 - -
Vivi5g05853 208 ProSiteProfiles Zinc finger B-box type profile. 28 67 IPR000315 GO:0008270
Vivi5g05853 208 SUPERFAMILY B-box zinc-binding domain 26 72 - -
Vivi5g05853 208 Pfam PLATZ transcription factor 69 141 IPR006734 -
Vivi5g05853 208 CDD Bbox2 28 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05853 Vivi-Chr5 162587384 162590421 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vivi5g05853 PLATZ 1.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05853 - - tpra:123915973 206.453