Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05852 ATGTCTTTCAGCGGAACCCAACAGAAATGCAAGACTTGCGATAAAACCGTTCATTTGGTTGATACATTATCGGCTGATGGTAATGTTTATCACAAAAACTGCTTCAGATGTCATCAATGCAATGGCCTTCTTGCGATGAGCAATTATACATCAAATGAAGGAGTTTTGTATTGCAAGACTCATGCTGAGCAGCTTTTCAAGGATTCCGCAATCAAGAAAACCCCGTCAGGAAAGCCCAGCGAACTGCCTAGAGCCCCAAGCAAACTTTCCGCTTTCTTCTCGGGGACTCAAGAAAAATGTTCATCTTGCAAGAAGACGGTATATCCATTGGAAAAGTTGACAGTGGAAGGTGAATTTTACCACAAATCATGCTTTAGGTGCACACATGCGGGATGTTTTCTGAGCCCTTCATCCTACGCTGCTCTCGACGGATACATATACTGCAAACCACACTTTTCTCAGTTGTTTAAGGCTAAAGGTAGCTATAGTTATCTCTCCAAACAAGCTTCAATGAAGAAAGAAGAAGCGCAGCAACAGGCTGCAGAAGCGAAAACAGACGATAATTCAGAAGCAGCATCCGACGCAGAGACAAAGGAAGAGCAACAAGATCCTGCTGCTGTCACGGAAGAGGCGTAG 636 0.4403 MSFSGTQQKCKTCDKTVHLVDTLSADGNVYHKNCFRCHQCNGLLAMSNYTSNEGVLYCKTHAEQLFKDSAIKKTPSGKPSELPRAPSKLSAFFSGTQEKCSSCKKTVYPLEKLTVEGEFYHKSCFRCTHAGCFLSPSSYAALDGYIYCKPHFSQLFKAKGSYSYLSKQASMKKEEAQQQAAEAKTDDNSEAASDAETKEEQQDPAAVTEEA 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05852 211 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vivi5g05852 211 MobiDBLite consensus disorder prediction 177 205 - -
Vivi5g05852 211 ProSiteProfiles LIM domain profile. 98 158 IPR001781 -
Vivi5g05852 211 MobiDBLite consensus disorder prediction 173 211 - -
Vivi5g05852 211 Coils Coil 166 186 - -
Vivi5g05852 211 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 92 125 - -
Vivi5g05852 211 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Vivi5g05852 211 Gene3D Cysteine Rich Protein 4 71 - -
Vivi5g05852 211 Gene3D Cysteine Rich Protein 94 164 - -
Vivi5g05852 211 SMART lim_4 9 61 IPR001781 -
Vivi5g05852 211 SMART lim_4 99 151 IPR001781 -
Vivi5g05852 211 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 69 - -
Vivi5g05852 211 FunFam LIM domain and actin-binding 1 4 73 - -
Vivi5g05852 211 FunFam LIM domain and actin-binding 1 94 164 - -
Vivi5g05852 211 PANTHER OS06G0237300 PROTEIN 95 204 - -
Vivi5g05852 211 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Vivi5g05852 211 Pfam LIM domain 10 64 IPR001781 -
Vivi5g05852 211 Pfam LIM domain 100 155 IPR001781 -
Vivi5g05852 211 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 126 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05852 Vivi-Chr5 162585005 162586585 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vivi5g05852 LIM 5.1e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05852 - K24413 tpra:123915974 344.739