Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05784 ATGGAGTGGAACAATTTGAAAGCACCTTCATGGGATTTAACTGAAATGGAACAAGGAACCTTAAACAACATAGAAACAACAATGGATGGTTCAAGGAGTTATGGATTTGGAGATTATAGAACAACAAAAGGGGAATTTTCTGTTGACTTGAAACTTGGTCAAGTTGGAAATTCTAGTACTGAATCATCAAAATCCAAAGATGTTGTTACTGGTGGTGGTGTTGGTGGAGGTGGAGGAGTTTCGAAAATGGCATCTTCGTCGTCTTCGACTTCGGGCTCGTCTAAGAGAGCTAGAGCTATTAACAATGGAACTCATATAGTTTCATGTCTAGTTGATGGTTGTCAAGCTGATCTTAGTATTTGTAGAGACTATCATAGACGCCATAAGGTTTGTGAACTTCATTCTAAGACTGCTCAGGTCACTATTGGTGGACATAAACAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCACTTGAAGAATTTGATGAAGGAAAAAGGAGTTGCAGAAAACGTCTAGATGGTCACAACAGAAGAAGAAGAAAGCCACAAGCAGAAGCTATAAGTCGATCTAGTAGCTTTTTGTCCAATTACCAAGGAACCCAGCTGTTACCCTTCTCAAGTTCACATATATACCCTTCAACTGCTATGATGAACCCTACTTGGGGTGGAACAGATGTTAGACTCCATACCCAACACCAACAACAAATGCACCCCCATCTTGTCCCAAAACAAGACCTTTTCCTAGGAACATCCTCTCTATCAACCAACAACACATACAAACAAGGGAAGCAACTATCATCATCATCATCATCATCATTCATTCATCAAGCTACTAACCACCAAAGCCATCAGCAACATCTTTCATCTTCTTCCATGAATCCATCTTTTACCAGGACAAACCCTTTTTCAGAAAGATACAAAATGATTTGCGACAGCAACAGCAGCAACAACAATAACAGCAACGCTTCTTGTGCTCTCTCTCTTCTGTCATCACCGCCGCTACCCGTAGTATCATCACAGACACATGATCATCATCATCATCATCAGATGGTGAATAATACTATTCATTCATCTTTTATGCAACCCTTAGGTTTGAGTTTGCATGATCATAGCTTGGGGTCTGTGGACCATGTTTTGGGTCCAAATGATCAGACTGGTCATTGTTCATCCATTTATAATATGGGATCTAATGAGTCTCATTCTCAGGGAGATAATAATGATGCTCCTCCTCCATTATATCCTTTTCAATGGGATTAG 1260 0.4016 MEWNNLKAPSWDLTEMEQGTLNNIETTMDGSRSYGFGDYRTTKGEFSVDLKLGQVGNSSTESSKSKDVVTGGGVGGGGGVSKMASSSSSTSGSSKRARAINNGTHIVSCLVDGCQADLSICRDYHRRHKVCELHSKTAQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQAEAISRSSSFLSNYQGTQLLPFSSSHIYPSTAMMNPTWGGTDVRLHTQHQQQMHPHLVPKQDLFLGTSSLSTNNTYKQGKQLSSSSSSSFIHQATNHQSHQQHLSSSSMNPSFTRTNPFSERYKMICDSNSSNNNNSNASCALSLLSSPPLPVVSSQTHDHHHHHQMVNNTIHSSFMQPLGLSLHDHSLGSVDHVLGPNDQTGHCSSIYNMGSNESHSQGDNNDAPPPLYPFQWD 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05784 419 Gene3D - 100 170 IPR036893 GO:0003677|GO:0005634
Vivi5g05784 419 MobiDBLite consensus disorder prediction 259 299 - -
Vivi5g05784 419 MobiDBLite consensus disorder prediction 81 97 - -
Vivi5g05784 419 FunFam Squamosa promoter-binding-like protein 14 100 170 - -
Vivi5g05784 419 Pfam SBP domain 109 182 IPR004333 GO:0003677
Vivi5g05784 419 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 66 399 IPR044817 GO:0003677
Vivi5g05784 419 SUPERFAMILY SBT domain 107 188 IPR036893 GO:0003677|GO:0005634
Vivi5g05784 419 MobiDBLite consensus disorder prediction 395 419 - -
Vivi5g05784 419 ProSiteProfiles Zinc finger SBP-type profile. 106 183 IPR004333 GO:0003677
Vivi5g05784 419 MobiDBLite consensus disorder prediction 56 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05784 Vivi-Chr5 161723620 161728518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05784 1 229 SBP-box Gene Family AT5G50670 48.945 5.02e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi5g05784 SBP 7.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05784 - - mtr:25502014 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05784 5 161723620 161728518 Vivi5g05784 5 161723620 161728518 ECH
Vivi5g05784 5 161723620 161728518 Vivi3g02189 3 36100196 36103021 PCT