Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05754 ATGGACAAGCTGAATTTTATTAAAAATGGAGTGAGTAGATTGCCTCCCGGTTTTCGTTTCCAACCGACCGATGAAGAACTTGTTTTTCAGTATTTGAAATGTAAAATCTTCTCATGCCCCTTGCCAGCTTCCATCATTCCTGAGGTCAATGTTTGCAAGTATGATCCTTGGGATTTGCCAGGAGGTTGTGATGAACATGAGAGGCATTTCTTCAGCTCCAAGGAAGCAAAATATAGAAATAGTAATAGGATGAGTAGAACAACAAAATGTGGATATTGGAAAGCAACAGGATCAGACAAAAGAATTTCATCTTCAACTTGTAATGGCATTGTGGGGATAAGAAAAACCCTAGTTTTTTATCAAGGAAAATCTCCAAATGGTTCTAGAACTAATTGGATCTTGCATGAATATCGCCTCGTCAATGTAGAAACTAGTCCTTGCAATTCAACTCAGAATTATGGAAATGAAATAGGAGATTGGCTTCTATGTCGATTATCGACAAGGAAAAGAAATTTAGAATATGGAAGCACTAGTACTCATAATAATAACAATAATAATGCTAGTCCGAATTCGAGATTAATGTTTGATTTTATGATGGTAAACAACAAGACATGTTCTTCTACTTCATCTTCATGTTCAAGTTCAAGTAACAACAACAACAACATTGAGGTCTCTTCAAATCTACAAGATCATGAACAAGATTATGCTGATCATTTTTAA 720 0.3528 MDKLNFIKNGVSRLPPGFRFQPTDEELVFQYLKCKIFSCPLPASIIPEVNVCKYDPWDLPGGCDEHERHFFSSKEAKYRNSNRMSRTTKCGYWKATGSDKRISSSTCNGIVGIRKTLVFYQGKSPNGSRTNWILHEYRLVNVETSPCNSTQNYGNEIGDWLLCRLSTRKRNLEYGSTSTHNNNNNNASPNSRLMFDFMMVNNKTCSSTSSSCSSSSNNNNNIEVSSNLQDHEQDYADHF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05754 239 SUPERFAMILY NAC domain 10 166 IPR036093 GO:0003677|GO:0006355
Vivi5g05754 239 MobiDBLite consensus disorder prediction 210 229 - -
Vivi5g05754 239 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Vivi5g05754 239 Gene3D NAC domain 23 174 IPR036093 GO:0003677|GO:0006355
Vivi5g05754 239 MobiDBLite consensus disorder prediction 210 239 - -
Vivi5g05754 239 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 219 - -
Vivi5g05754 239 ProSiteProfiles NAC domain profile. 14 168 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05754 Vivi-Chr5 161164938 161166154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05754 1 170 NAC Transcription Factor Family AT5G13180 61.765 7.15e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi5g05754 NAM 3.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05754 - - gmx:100812015 345.125