Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05748 ATGGACGATGACCAGCAATATGAAAACGGCAGGCATAAAGTGGAATACTACAGAGGAGCACATTCTCCGTGGAATGCGGATCCCCAACATCAAATAAAGGAACAAAATGCCCTAGTTATGAATAAAAAAATTAGGTCCATTATGGCTGAGAGGCAAGCTACCATTCTGGAAATTGAACTAGAGGCTGCTATATCTGAAAAGAATGAAGCCTTGGCTGCTCGAGATGTTGCCCTTAGGCAGAGGGATGAAGCACTTGCTCAGAGGGATAATGCTCTGTTGGAACGGGATAATGCCCTTGCAGCCCTTCAATGTCGGAATAGTTCTTCCAACTTTTCATTCAACGGTAGAAATCAATGTGGATCAAAGCGGATGCACCATTCTTCAAACCGTAATCAATCCAACATGACAGAAGCAGCATATAACTCGACAGATATAATAATAAGAGACGCTTCCCCAGTAACTGTTATAACTTCTGAAGCCATCGAGTCTCATCTAACTAAGATGACAAAGGATAATTCCAAGGCATCAAAGACACCTACAAAAGTAAAGAAAATGGGTGAGGATTTAAATAGGAAGGCTTATTCTGAAGGGACGAAGATCAAATCTGAATGGGATAGACAGGATGTTGGCTTGAATTTGATTACTTTCGATGAAACTGTCATGCCTATCCCAGTTTGCACGTGTACCGGAGTACCACGACAGTGCTACAAATGGGGTAACGGTGGATGGCAATCATCTTGTTGTACTACTACACTGTCAATGTATCCACTACCACAGCTTCCAAACAAGCGCCATGCGCGCATTGGAGGGCGGAAAATGAGCGGCAGTGTTTTTACAAGACTTCTCAGTAGGTTTGCATCAGAAGGCCATGATTTATCTTTGCCATTGGATCTTAAGGATTACTGGGCCAGACATGGAACAAATCGCTACATCACCATTAAGTAG 945 0.4296 MDDDQQYENGRHKVEYYRGAHSPWNADPQHQIKEQNALVMNKKIRSIMAERQATILEIELEAAISEKNEALAARDVALRQRDEALAQRDNALLERDNALAALQCRNSSSNFSFNGRNQCGSKRMHHSSNRNQSNMTEAAYNSTDIIIRDASPVTVITSEAIESHLTKMTKDNSKASKTPTKVKKMGEDLNRKAYSEGTKIKSEWDRQDVGLNLITFDETVMPIPVCTCTGVPRQCYKWGNGGWQSSCCTTTLSMYPLPQLPNKRHARIGGRKMSGSVFTRLLSRFASEGHDLSLPLDLKDYWARHGTNRYITIK 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05748 314 PANTHER - 1 314 IPR010409 -
Vivi5g05748 314 SMART GAGA_bind_2 1 314 IPR010409 -
Vivi5g05748 314 Pfam GAGA binding protein-like family 1 314 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05748 Vivi-Chr5 161143301 161153969 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05748 1 314 BBR or BPC Transcription factor family AT2G21240 56.508 6.08e-125 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vivi5g05748 GAGA_bind 2.8e-97 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05748 - - gmx:100813103 524.242