Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05743 ATGGCAGCTTTTTCATACCAACTACCTTTTCTTGTTGACTCTTCATCTTATAACTTCGCTAAGATAAACACTTCTCTTACTCCTCACACTCTTCATGTTCATCAAGATAACAACAACTCTCTTAGTAATCAAGAAACTAGTTGTGTTGATCAAGCCTCTAAGAATAGTTTAAGTCCTGAATCGTCCATGGTGGTTGATAATCTTGAAAAGGGTGAACAAGTTACTCAGAAAGTGAGTTCTATGGAGAAGAAGAGAAGGGTTAGAGCTAACAAGGCGTCTTCGAGTAGCCCCTTATCTAAGGAGTCAAAAGAAGAGAGAAGCAAAAAACAAAAGAAGACTAGTTGTGAAGGGATGAGAGGAGAAGAGAAGAAGGATCAAAAGAAATTCTTTGAAGAGGCTCCTCCAAGTGGCTATATCCATGTCAGAGCAAGGAGGGGTCAGGCAACAGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGATATTGCAGCAACTTGTGCCTGGCTGTGATAAAGTAACTGGAAAAGCTCTTGTGTTGGATGAAATAATCAATTATGTACAGTCCTTACAGAATCAAGTAGAGTTCTTGTCAATGAAGATTGCATCAGTGAATCCAATCTTCTTTGACTTTGCAATGGACTTAGACATGGTTAGACCAGATCATGAGAGATTAAATAGCATAACATCACCATCACCATCAACACCACTACAATCAGTACCATTATGCAGCTCCAACCATGCCACACCTTTTGCTGACACAACCCTCACAAGCTTCCACCATGCTGCATCTAATAATGAATATCTTTTGGATTATTCAACTCCAGTTTTTCATCAAGGACAAAGGTCAAATACCTTCTTTGAGCACACTGATGGGCCATATTGGGACTTAGAGGAGCAACGACAAAAGCTTCTTAATCCATATGGATTCAGCAACAATACATGTTCCTTAAATTAA 978 0.3947 MAAFSYQLPFLVDSSSYNFAKINTSLTPHTLHVHQDNNNSLSNQETSCVDQASKNSLSPESSMVVDNLEKGEQVTQKVSSMEKKRRVRANKASSSSPLSKESKEERSKKQKKTSCEGMRGEEKKDQKKFFEEAPPSGYIHVRARRGQATDSHSLAERVRREKISERMKILQQLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKIASVNPIFFDFAMDLDMVRPDHERLNSITSPSPSTPLQSVPLCSSNHATPFADTTLTSFHHAASNNEYLLDYSTPVFHQGQRSNTFFEHTDGPYWDLEEQRQKLLNPYGFSNNTCSLN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05743 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 212 IPR036638 GO:0046983
Vivi5g05743 325 CDD bHLH_AtBPE_like 137 222 - -
Vivi5g05743 325 MobiDBLite consensus disorder prediction 33 75 - -
Vivi5g05743 325 FunFam Basic helix-loop-helix transcription factor 144 216 - -
Vivi5g05743 325 MobiDBLite consensus disorder prediction 98 131 - -
Vivi5g05743 325 MobiDBLite consensus disorder prediction 33 131 - -
Vivi5g05743 325 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 37 251 IPR024097 GO:0006355
Vivi5g05743 325 SMART finulus 153 203 IPR011598 GO:0046983
Vivi5g05743 325 Pfam Helix-loop-helix DNA-binding domain 151 198 IPR011598 GO:0046983
Vivi5g05743 325 Gene3D - 144 213 IPR036638 GO:0046983
Vivi5g05743 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 197 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05743 Vivi-Chr5 161097365 161100112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05743 106 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 69.492 3.55e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi5g05743 HLH 4.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05743 - - gmx:100796018 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05743 5 161097365 161100112 Vivi5g05743 5 161097365 161100112 ECH