Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05741 ATGGCCTTGTTTGACAAATCATCTCGCAACTCTCTTGTTCCTGGATTTCTTTACTCATCAAATGCATTCTCCCATTTGGATTCTTCTTCAATCAACCATGCACCATCATCATCACCACGACCTCATAGGAATAATATTCCTATGATGATCCCTTCACCGGCGGAGAGTAGCATCCCCATGTTTTCTCCTGCTTACTACGCCGCATGCAGCGCCGGTGGCGTCTTCAGCTGTGGCCTTACACACATGGCTGTCACCCCTCTTGATCTCGTCAAGTGCAACATGCAGATTGACCCTGCAAAGTATAAGAGCATCCCATCAGGATTTGGAGTTTTGCTGAAGGAGCAAGGTGCTAGAGGTTTCTTCAAAGGCTGGGTGCCAACTTTGCTTGGTTATAGTGCTCAAGGAGCATGCAAGTTTGGATTTTATGAATTCTTCAAAAAGTATTACTCAGATCTTGCAGGAGAAGAGAATGCAGTCAAGTATAAAACCTTTATATATCTAGCTGGTTCTGCTTCCGCAGAAGTTATTGCTGATGTTGCCCTTTGTCCTATGGAGGCTGTCAAGGTTCGTGTACAAACTCAGCCTGGATATGCTCGTGGTTTGTCCGACGGGTTGCCCAAGTTTATCAAGGCTGATGGTGTTTCCGGGTTGTATAGAGGAATTGTTCCTCTCTGGGGCCGTCAGATACCATACACTATGATGAAATTTGCTTCCTTTGAGACAATTGTGGAGATGATCTACAAATATGCGATTCCAACCCCGAAAGCACAATGCAGCAAAAGTAAGCAGCTAGGAGTGAGTTTTGCTGCAGGATATGTTGCAGGTGTACTGTGTGCAATTGTCTCACACCCTGCTGATAATCTTGTTTCTTTTCTCAACAATGCCAAGGGAGCCACTGTTGGTGATGCAGTGAAGAAGATTGGAGTAGTTGGTCTTTTCACTCGCGGCCTTCCTCTTCGTATAGTTATGATTGGAACACTAACCGGAGCTCAGTGGGGTCTCTATGATTCATTTAAAGTTTTTGTAGGACTGCCAACTACTGGTGGAGCTGCTCCTCCACCACCGACACCTACAAATTAA 1080 0.4537 MALFDKSSRNSLVPGFLYSSNAFSHLDSSSINHAPSSSPRPHRNNIPMMIPSPAESSIPMFSPAYYAACSAGGVFSCGLTHMAVTPLDLVKCNMQIDPAKYKSIPSGFGVLLKEQGARGFFKGWVPTLLGYSAQGACKFGFYEFFKKYYSDLAGEENAVKYKTFIYLAGSASAEVIADVALCPMEAVKVRVQTQPGYARGLSDGLPKFIKADGVSGLYRGIVPLWGRQIPYTMMKFASFETIVEMIYKYAIPTPKAQCSKSKQLGVSFAAGYVAGVLCAIVSHPADNLVSFLNNAKGATVGDAVKKIGVVGLFTRGLPLRIVMIGTLTGAQWGLYDSFKVFVGLPTTGGAAPPPPTPTN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05741 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 161 245 IPR018108 -
Vivi5g05741 359 Gene3D Mitochondrial carrier domain 65 342 IPR023395 -
Vivi5g05741 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 64 148 IPR018108 -
Vivi5g05741 359 SUPERFAMILY Mitochondrial carrier 65 336 IPR023395 -
Vivi5g05741 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 262 341 IPR018108 -
Vivi5g05741 359 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 49 352 IPR044677 GO:0005315|GO:1990547
Vivi5g05741 359 FunFam Phosphate carrier protein, mitochondrial 64 342 - -
Vivi5g05741 359 Pfam Mitochondrial carrier protein 67 150 IPR018108 -
Vivi5g05741 359 Pfam Mitochondrial carrier protein 163 249 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05741 Vivi-Chr5 161079928 161082014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05741 6 354 Chloroplast and Mitochondria Gene Families AT5G14040 73.699 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05741 K15102 - gmx:100800530 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05741 5 161079928 161082014 Vivi5g05741 5 161079928 161082014 ECH