Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05736 ATGTTTGGGATGAGAGATCTGGAGGAAGAAAGAGAGAGAAGAGATAACATGGCGTCGTCTGAGGTTTCTATGAAGGGGAATTGTGTGAATGGAAAAGGTGAAACAAACGAGGGTGTTGGAGATGGTCAAAATGGCTCTTCGTCTTCATCATCAGGAGAAGCTGAGGTTCAACTTTACAGAGAACTATGGCATGCTTGTGCGGGACCGTTGGTGACGGTTCCGAGAGAAGGAGAGCTTGTGTTTTATTTTCCTCAAGGACATATTGAACAGGTGGAGGCTTCGACGAATCAAGCGTCGGAACAACACATGCCGGTTTACGATCTCCGACCTAAGATCCTCTGTCGGGTCATCAACGTTATGTTGAAGGCGGAGCCTGATACTGATGAGGTGTTTGCACAAGTGACTTTGGTTCCAGAGCCAAATCAAGATGAGAATGCGGTTGAGAAAGAAGCTCCTCCTGCTCCTCCTCCGCGGTTTCATGTTCATTCGTTTTGTAAAACGTTGACAGCTTCTGATACTAGTACCCATGGTGGGTTTTCTGTTCTTCGACGTCACGCTGATGAATGTCTTCCTCCACTGGACATGTCAAAGCAACCACCTACACAGGAGTTGGTGGCAAAAGATTTGCATGGAAATGAGTGGCGTTTTAGACACATCTTTCGCGGTCAACCGCGTAGACACTTGCTTCAAAGTGGTTGGAGTGTTTTTGTCAGTTCTAAGAGGCTGGTTGCTGGAGATGCATTTATATTTCTAAGAGGTGAGAATGGTGAGCTTCGTGTTGGTGTAAGGCGTGCAATGAGGCAGCAGGGTAATGTTCCGTCCTCGGTTATCTCCAGCCACAGCATGCATCTTGGTGTTCTTGCAACTGCTTGGCATGCAGTGATGACAGGGACCATGTTCACTGTCTATTACAAACCTCGGACCAGTCCAGCGGAATTTATTGTTCCATATGATCAATACATGGAGTCTCTCAAAAATAATTATACCATTGGTATGCGGTTCAAAATGAGATTTGAGGGTGAAGAGGCTCCTGAGCAAAGGTTTACCGGGACCATTGTTGGAATTGAAGATTCTGACACTAAAAGATGGCCTAAATCTAAATGGAGATGTCTCAAGGTTAGATGGGACGAAACATCTAACATACCTCGTCCTGAGAGAGTATCCCCTTGGAAAATAGAGCCTGCTCTTGCCCCTCCAGCTCTGAATCCTCTTCCGATGCCCAGGCCTAAAAGGCCTCGTGCTAACATTGTTCCATCATCTCCAGATTCTTCTGTTCTTACTCGCGAAGCATCGTCTAAAGTAAGCATGGACCCTTTGCCCGCTAGCGGTTATCAAAGGGTCTTGCAAGGTCAAGAATCATCGACCTTGAGAGGAAATTTGGCAGAGAGCAACGAGTCTTATAATGCAGAGAAATCTGTTGTGTGGCCACCAGCAAATGATGAGGAAAAGATTGATGCTGTTTCTACTTCAAGAAGATATGGATCAGAGAACTGGATGTCAATGTCAAGGCAGGAGCCAACATATTCGGATCTTCTATCAGGATTTGGCAGTGCCCGTGGAGATCATTCATCCCAGCAATTGTTCGTTGATCAAACTGGTCACATGGTCAACCATGGTAGGAAAAATTTGTTGGATCGCGATGGGAAACATAACATGCTTAGTCAGTGGCCTGTAATGCCACCTGGTCTGTCGCTCAATTTCTTGCACTCTAATATGAAAGGTTCTCCACAAGTCGGCGATAATTCAACTTACCAACTTCAAGGGAATATGAGATACAGTGCGTTTGGTGACTACTCTGTGCTTCATGGACATAAAGTTGAAAATCCACATGGAAACTTTTTGATGCCACCTCCACCTCCAACTCAGTATGAGAGTCCTCGTTCAAGAGAACTTCCTCATAAACAAATGTCTGCAACTACCAGTGAGGCGGCAAAACAGAAAGACGGCGAATGTAAGCTTTTCGGCTTCTCGCTTCTCAGTAGCCCGACTATGCAAGATCCTTCAGTATCACAAAGAAATAATACAAGTGAGACAGTTATTCCCATGCAAATTTCATCATCACAACAACATACTTTTGAAAATGATCAGAAGTCCGAGCATTCAAAGAGCTCAAAACCGGCAGATAATCCCGTTGTAGTCGATGACCAAGAGAATCAAATTCAAACTCCTCAATCTCAACTCAAAGATGTTCAACTCAAATCTCAAAATGGTTCTGCTCGAAGTTGCACAAAAGTTCACAAGAAAGGGATCGCACTTGGTAGGTCGGTTGATCTTACAAAGTTTAACGACTACGATGAACTAGTCACTGAATTGGATCAGCTATTTGAATTCGGAGGCGAATTAGCATCTCCTCAGAAAGATTGGCTTGTCGTCTACACTGATAACGAGGGTGACATGATGCTTGTTGGTGATGATCCATGGCAGGAGTTTTGTTCGATGGTCCGCAAGATCTACATCTACCCTAAAGAGGAGATTCAGAAAATGAGCCCCGGTACATTGAGTTCAAAGAACGAAGAGAATCATTCAGCTACCGATGGCGGAGATGCACAGGAAACAAAATGTCAGATGAATCAAACAACTTCAGATGCTTGA 2592 0.4468 MFGMRDLEEERERRDNMASSEVSMKGNCVNGKGETNEGVGDGQNGSSSSSSGEAEVQLYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRVINVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKEAPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVMTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDTKRWPKSKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRANIVPSSPDSSVLTREASSKVSMDPLPASGYQRVLQGQESSTLRGNLAESNESYNAEKSVVWPPANDEEKIDAVSTSRRYGSENWMSMSRQEPTYSDLLSGFGSARGDHSSQQLFVDQTGHMVNHGRKNLLDRDGKHNMLSQWPVMPPGLSLNFLHSNMKGSPQVGDNSTYQLQGNMRYSAFGDYSVLHGHKVENPHGNFLMPPPPPTQYESPRSRELPHKQMSATTSEAAKQKDGECKLFGFSLLSSPTMQDPSVSQRNNTSETVIPMQISSSQQHTFENDQKSEHSKSSKPADNPVVVDDQENQIQTPQSQLKDVQLKSQNGSARSCTKVHKKGIALGRSVDLTKFNDYDELVTELDQLFEFGGELASPQKDWLVVYTDNEGDMMLVGDDPWQEFCSMVRKIYIYPKEEIQKMSPGTLSSKNEENHSATDGGDAQETKCQMNQTTSDA 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05736 863 SUPERFAMILY CAD & PB1 domains 741 817 - -
Vivi5g05736 863 MobiDBLite consensus disorder prediction 37 53 - -
Vivi5g05736 863 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi5g05736 863 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Vivi5g05736 863 CDD B3_DNA 162 264 IPR003340 GO:0003677
Vivi5g05736 863 FunFam Auxin response factor 162 266 - -
Vivi5g05736 863 MobiDBLite consensus disorder prediction 609 646 - -
Vivi5g05736 863 MobiDBLite consensus disorder prediction 687 711 - -
Vivi5g05736 863 MobiDBLite consensus disorder prediction 1 19 - -
Vivi5g05736 863 MobiDBLite consensus disorder prediction 1 53 - -
Vivi5g05736 863 SUPERFAMILY DNA-binding pseudobarrel domain 160 293 IPR015300 -
Vivi5g05736 863 Gene3D - 161 266 IPR015300 -
Vivi5g05736 863 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Vivi5g05736 863 MobiDBLite consensus disorder prediction 417 431 - -
Vivi5g05736 863 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 57 829 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi5g05736 863 SMART B3_2 164 266 IPR003340 GO:0003677
Vivi5g05736 863 FunFam Auxin response factor 735 829 - -
Vivi5g05736 863 Gene3D - 736 829 - -
Vivi5g05736 863 Gene3D - 327 397 - -
Vivi5g05736 863 MobiDBLite consensus disorder prediction 397 414 - -
Vivi5g05736 863 MobiDBLite consensus disorder prediction 847 863 - -
Vivi5g05736 863 FunFam Auxin response factor 327 399 - -
Vivi5g05736 863 MobiDBLite consensus disorder prediction 829 863 - -
Vivi5g05736 863 MobiDBLite consensus disorder prediction 397 440 - -
Vivi5g05736 863 Pfam AUX/IAA family 650 827 IPR033389 -
Vivi5g05736 863 ProSiteProfiles PB1 domain profile. 740 822 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05736 Vivi-Chr5 161005527 161010485 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05736 17 863 B3 DNA Binding Superfamily AT5G62000 64.229 0.0 1090
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi5g05736 AUX_IAA 1.7e-05 CL0072