Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05734 ATGCATTTCACAAATCTCGATGACACTCCAATGTTCCGTCAACAGCTTCAATGCTTGGAGGAAAGTGCGGAATCACTGCGCCTCAGAAGCTGGAAGTTCTACAAAGGATGTAGAAAGTATACGGAAGGACTTGGAGAGGCATATGATGGGGACATTGCATTTGTAAGTTCCCTTGAAAATTTTGGAGGAGGACATAATGATCCTCATTTCGTTGCTTTGGGAGGACCTGTAATGAACAAATTTACCATTGCTTTGAGAGAAATCAGTACATTCAAGGAACTTCTTCGGTCGCAGGTAGAACACATGATTGATGACCGGTTACTACAAATCGTCAATGTTGACATCAATGAAGTTAAGGAAGCTCGTAAGCGTTTTGACAAAGCCGCCCTTGTATATGACCAGGCACGTGAAAAGTTTATGGCGTTGAGAAAAAGCACTAAGATTGATGTTGCCACTCTCGTAGAAGAGGAACTGAAGATTGCAAGAACGTCGTTTGAAGAAGCCCGATTCAGTCTGGTTGGTGCTCTTAATAACGTTGAGGTCAAGAAGAGATTTGAGTTTTTGGAGGTTATCACTGGAATTATGGACGCCCATCTTCGATACTTTCAACAGGGATATAACCTACTACATCAGATGGAACCTTTCATTATTGAGGTTTTGGATTATGTACAACAGTCAAAAGAAAGTTTCGACAAGGACCAGGTTTTACTTTTTAAAAGAATGCAAGAATACAAAAAACAAGTTTATCAAGAAAGTAGGCTGTCCTTGAATGGTCCTTACGGTTCTCCTAGTGGAGAAGCTGTGCATCCTTTTTCTAGGATATCAAATGAAGTAGTAGATGTAGTAAACGAATCTGCGGCCAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCAAAGCGATCTTCCAATTTGAGAGGTGACTGGAAAAGAAGATATTTTATTCTTGATAGTCGAGGAATGTTGTACTACTACCGCAAACCATGGAGCATGTCATATGGCAGCAATCAATCATCTCCAAGGAAGAATAGTCTCACTGATAATGGTTCTGGGCTTCTGAGCCGATGGCTTTCTTCTCATTACCATGGGGGCGTCCATGATGAAAAATCTGTAGCACGTCACACAGTAAATCTGCTAACGTCAACAATCAAGGTTGATGCTGATCAGTCAGATTTAAGATTTTGCTTCAGAATAATTTCGCCATCGAAGAACTATACATTGCAGGCTGAAAATGCAGTGGACCAGATGGAATGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTGTTGAGTATCCAGACACTAGGATCACCTCTATCAGCTGACTCAGAAAACAGCGACTCTTACTTTACCAATAAGAGTAATGTGTTAGAAAGTTCTCCAGATGATGATCTCACTGAGCTTGAAAAGGCTGCCTCCAAGAATTTCGCTCCCAGTCACCATTTACATTTATCTAAAAGTATGCAGTTGCCTAAACACAGTATTAGAAACGAAAAACCTATTGATGTTCTTAGAAAGGTGAGCGGGAATGACAAATGTGCTGATTGTGGTAGACCTGAACCAGATTGGGCATCTTTAAACCTTGGCATCCTTATATGCATTGAATGCTCTGGTGTTCATCGTAATCTCGGTGTGCATATATCTAAAGTAAGATCACTCACACTTGATGTGAAAGTCTGGGACTACTCTGTTTTAAGTATGTTTGAGTCCCTGGGTAATCATTTTGCAAACTCAGTTTGGGAGGAGCTGTTATGTTCAAGGAGTACTTTGCAAAATGTTGACACCCCTGCTAGTTCATCCAAGGCGAATAAAGACAAGCTATTTCATGCAAGAAAGCCAAAACATGATGATTCTAGTTCATTAAAGGAAAGGTTCATTCACGCAAAGTATGCTGAGAAAATATTTATTTGCCGGACAGAGAAAAATTCCGCGCAACAGATTTTGAAAAGCATCTGTGCTAATGACAAGAAGGCAGTGTACCAGCACATTGTCAAGTCAGATATGGATATCAATGCCATCAGTAGGAAAGCATTTTCTGGAACTGCGCAGGTGGCTCTTTCAACCCGGCTTCTTTGA 2079 0.4064 MHFTNLDDTPMFRQQLQCLEESAESLRLRSWKFYKGCRKYTEGLGEAYDGDIAFVSSLENFGGGHNDPHFVALGGPVMNKFTIALREISTFKELLRSQVEHMIDDRLLQIVNVDINEVKEARKRFDKAALVYDQAREKFMALRKSTKIDVATLVEEELKIARTSFEEARFSLVGALNNVEVKKRFEFLEVITGIMDAHLRYFQQGYNLLHQMEPFIIEVLDYVQQSKESFDKDQVLLFKRMQEYKKQVYQESRLSLNGPYGSPSGEAVHPFSRISNEVVDVVNESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFILDSRGMLYYYRKPWSMSYGSNQSSPRKNSLTDNGSGLLSRWLSSHYHGGVHDEKSVARHTVNLLTSTIKVDADQSDLRFCFRIISPSKNYTLQAENAVDQMEWMEKINGVIASLLSIQTLGSPLSADSENSDSYFTNKSNVLESSPDDDLTELEKAASKNFAPSHHLHLSKSMQLPKHSIRNEKPIDVLRKVSGNDKCADCGRPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDYSVLSMFESLGNHFANSVWEELLCSRSTLQNVDTPASSSKANKDKLFHARKPKHDDSSSLKERFIHAKYAEKIFICRTEKNSAQQILKSICANDKKAVYQHIVKSDMDINAISRKAFSGTAQVALSTRLL 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05734 692 PRINTS HIV Rev interacting protein signature 530 547 IPR001164 GO:0005096
Vivi5g05734 692 PRINTS HIV Rev interacting protein signature 511 530 IPR001164 GO:0005096
Vivi5g05734 692 PRINTS HIV Rev interacting protein signature 553 574 IPR001164 GO:0005096
Vivi5g05734 692 Pfam PH domain 294 427 IPR001849 -
Vivi5g05734 692 SMART arf_gap_3 499 645 IPR001164 GO:0005096
Vivi5g05734 692 CDD BAR_SFC_plant 15 215 IPR035670 -
Vivi5g05734 692 MobiDBLite consensus disorder prediction 594 617 - -
Vivi5g05734 692 ProSiteProfiles ARF GTPase-activating proteins domain profile. 499 647 IPR001164 GO:0005096
Vivi5g05734 692 Pfam Putative GTPase activating protein for Arf 502 637 IPR001164 GO:0005096
Vivi5g05734 692 SUPERFAMILY ArfGap/RecO-like zinc finger 498 638 IPR037278 -
Vivi5g05734 692 SUPERFAMILY PH domain-like 203 427 - -
Vivi5g05734 692 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Vivi5g05734 692 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Vivi5g05734 692 CDD ArfGap 502 631 - -
Vivi5g05734 692 Gene3D Arf GTPase activating protein 480 645 IPR038508 -
Vivi5g05734 692 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Vivi5g05734 692 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Vivi5g05734 692 CDD PH_ACAP 295 432 - -
Vivi5g05734 692 Gene3D - 285 436 IPR011993 -
Vivi5g05734 692 SMART PH_update 293 430 IPR001849 -
Vivi5g05734 692 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Vivi5g05734 692 Coils Coil 118 138 - -
Vivi5g05734 692 PANTHER CENTAURIN/ARF 4 670 IPR045258 GO:0005096
Vivi5g05734 692 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 481 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05734 Vivi-Chr5 160881583 160892777 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05734 509 637 C2H2 Transcription Factor Family AT4G21160 43.846 1.65e-22 97.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05734 5 160881583 160892777 Vivi5g05734 5 160881583 160892777 ECH
Vivi5g05734 5 160881583 160892777 Vivi3g02248 3 36986436 36992627 PCT