Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05733 ATGCATTTCACAAATCTCGATGACACTCCAATGTTCCGTCAACAGCTTCAATGCTTGGAGGAAAGTGCGGAATCACTGCGCCTCAGAAGCTGGAAGTTCTACAAAGGATGTAGAAAGTATACGGAAGGACTTGGAGAGGCATATGATGGGGACATTGCATTTGTAAGTTCCCTTGAAAATTTTGGAGGAGGACATAATGATCCTCATTTCGTTGCTTTGGGAGGACCTGTAATGAACAAATTTACCATTGCTTTGAGAGAAATCAGTACATTCAAGGAACTTCTTCGGTCGCAGGTAGAACACATGATTGATGACCGGTTACTACAAATCGTCAATGTTGACATCAATGAAGTTAAGGAAGCTCGTAAGCGTTTTGACAAAGCCGCCCTTGTATATGACCAGGCACGTGAAAAGTTTATGGCGTTGAGAAAAAGCACTAAGATTGATGTTGCCACTCTCGTAGAAGAGGAACTGAAGATTGCAAGAACGTCGTTTGAAGAAGCCCGATTCAGTCTGGTTGGTGCTCTTAATAACGTTGAGGTCAAGAAGAGATTTGAGTTTTTGGAGGTTATCACTGGAATTATGGACGCCCATCTTCGATACTTTCAACAGGGATATAACCTACTACATCAGATGGAACCTTTCATTATTGAGGTTTTGGATTATGTACAACAGTCAAAAGAAAGTTTCGACAAGGACCAGGTTTTACTTTTTAAAAGAATGCAAGAATACAAAAAACAAGTTTATCAAGAAAGTAGGCTGTCCTTGAATGGTCCTTACGGTTCTCCTAGTGGAGAAGCTGTGCATCCTTTTTCTAGGATATCAAATGAAGTAGTAGATGTAGTAAACGAATCTGCGGCCAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCAAAGCGATCTTCCAATTTGAGAGGTGACTGGAAAAGAAGATATTTTATTCTTGATAGTCGAGGAATGTTGTACTACTACCGCAAACCATGGAGCATGTCATATGGCAGCAATCAATCATCTCCAAGGAAGAATAGTCTCACTGATAATGGTTCTGGGCTTCTGAGCCGATGGCTTTCTTCTCATTACCATGGGGGCGTCCATGATGAAAAATCTGTAGCACGTCACACAGTAAATCTGCTAACGTCAACAATCAAGGTTGATGCTGATCAGTCAGATTTAAGATTTTGCTTCAGAATAATTTCGCCATCGAAGAACTATACATTGCAGGCTGAAAATGCAGTGGACCAGATGGAATGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTGTTGAGTATCCAGACACTAGGATCACCTCTATCAGCTGACTCAGAAAACAGCGACTCTTACTTTACCAATAAGAGTAATGTGTTAGAAAGTTCTCCAGATGATGATCTCACTGAGCTTGAAAAGGCTGCCTCCAAGAATTTCGCTCCCAGTCACCATTTACATTTATCTAAAAGTATGCAGTTGCCTAAACACAGTATTAGAAACGAAAAACCTATTGATGTTCTTAGAAAGGTGAGCGGGAATGACAAATGTGCTGATTGTGGTAGACCTGAACCAGATTGGGCATCTTTAAACCTTGGCATCCTTATATGCATTGAATGCTCTGGTGTTCATCGTAATCTCGGTGTGCATATATCTAAAGTAAGATCACTCACACTTGATGTGAAAGTCTGGGACTACTCTGTTTTAAGTATGTTTGAGTCCCTGGGTAATCATTTTGCAAACTCAGTTTGGGAGGAGCTGTTATGTTCAAGGAGTACTTTGCAAAATGTTGACACCCCTGCTAGTTCATCCAAGGCGAATAAAGACAAGCTATTTCATGCAAGAAAGCCAAAACATGATGATTCTAGTTCATTAAAGGAAAGGTTCATTCACGCAAAGTATGCTGAGAAAATATTTATTTGCCGGACAGAGAAAAATTCCGCGCAACAGATTTTGAAAAGCATCTGTGCTAATGACAAGAAGGCAGTGTACCAGCACATTGTCAAGTCAGATATGGATATCAATGCCATCAGTAGGAAAGCATTTTCTGGTGGCTCTTTCAACCCGGCTTCTTTGATTAATTCAAACATTTCATCTGAAAGTGAGAATCAGTTGATTGAGGACATACAAAATGGTTCTAGTGTGCTTCACCTGGCTTGCATAGTAAGTGATGCTGGTATGGTGGATCTGCTCCTACAGTATGGGGCGGATATAAACGCTTGTGATTCAAGAGGCCGGACACCACTACATTACTGTATTACCAGGGGGAAGCCTGCGGCTGCAAAAGTGCTTCTTGTGAGGGGGGGCAATCCAAATGTAGCAGACAAAGAAGGCCACACTCCTCTTAAACTTGCGTCAGAAACCGACAGTTTAGGCAATGAAATTCTCACTCTCTTGGCAAAAAGATGA 2400 0.4113 MHFTNLDDTPMFRQQLQCLEESAESLRLRSWKFYKGCRKYTEGLGEAYDGDIAFVSSLENFGGGHNDPHFVALGGPVMNKFTIALREISTFKELLRSQVEHMIDDRLLQIVNVDINEVKEARKRFDKAALVYDQAREKFMALRKSTKIDVATLVEEELKIARTSFEEARFSLVGALNNVEVKKRFEFLEVITGIMDAHLRYFQQGYNLLHQMEPFIIEVLDYVQQSKESFDKDQVLLFKRMQEYKKQVYQESRLSLNGPYGSPSGEAVHPFSRISNEVVDVVNESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFILDSRGMLYYYRKPWSMSYGSNQSSPRKNSLTDNGSGLLSRWLSSHYHGGVHDEKSVARHTVNLLTSTIKVDADQSDLRFCFRIISPSKNYTLQAENAVDQMEWMEKINGVIASLLSIQTLGSPLSADSENSDSYFTNKSNVLESSPDDDLTELEKAASKNFAPSHHLHLSKSMQLPKHSIRNEKPIDVLRKVSGNDKCADCGRPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDYSVLSMFESLGNHFANSVWEELLCSRSTLQNVDTPASSSKANKDKLFHARKPKHDDSSSLKERFIHAKYAEKIFICRTEKNSAQQILKSICANDKKAVYQHIVKSDMDINAISRKAFSGGSFNPASLINSNISSESENQLIEDIQNGSSVLHLACIVSDAGMVDLLLQYGADINACDSRGRTPLHYCITRGKPAAAKVLLVRGGNPNVADKEGHTPLKLASETDSLGNEILTLLAKR 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05733 799 Gene3D Arf GTPase activating protein 480 644 IPR038508 -
Vivi5g05733 799 PRINTS HIV Rev interacting protein signature 530 547 IPR001164 GO:0005096
Vivi5g05733 799 PRINTS HIV Rev interacting protein signature 511 530 IPR001164 GO:0005096
Vivi5g05733 799 PRINTS HIV Rev interacting protein signature 553 574 IPR001164 GO:0005096
Vivi5g05733 799 SUPERFAMILY PH domain-like 203 427 - -
Vivi5g05733 799 Gene3D - 645 799 IPR036770 -
Vivi5g05733 799 Pfam Putative GTPase activating protein for Arf 502 637 IPR001164 GO:0005096
Vivi5g05733 799 SMART arf_gap_3 499 645 IPR001164 GO:0005096
Vivi5g05733 799 CDD BAR_SFC_plant 15 215 IPR035670 -
Vivi5g05733 799 ProSiteProfiles ARF GTPase-activating proteins domain profile. 499 647 IPR001164 GO:0005096
Vivi5g05733 799 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Vivi5g05733 799 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Vivi5g05733 799 CDD ArfGap 502 631 - -
Vivi5g05733 799 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 481 647 - -
Vivi5g05733 799 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Vivi5g05733 799 SMART PH_update 293 430 IPR001849 -
Vivi5g05733 799 ProSiteProfiles Ankyrin repeat region circular profile. 741 773 - -
Vivi5g05733 799 Gene3D - 285 436 IPR011993 -
Vivi5g05733 799 Pfam PH domain 294 427 IPR001849 -
Vivi5g05733 799 MobiDBLite consensus disorder prediction 594 617 - -
Vivi5g05733 799 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Vivi5g05733 799 ProSiteProfiles Ankyrin repeat profile. 741 773 IPR002110 GO:0005515
Vivi5g05733 799 SUPERFAMILY ArfGap/RecO-like zinc finger 498 638 IPR037278 -
Vivi5g05733 799 PANTHER CENTAURIN/ARF 4 797 IPR045258 GO:0005096
Vivi5g05733 799 ProSiteProfiles Ankyrin repeat profile. 708 740 IPR002110 GO:0005515
Vivi5g05733 799 Pfam Ankyrin repeats (many copies) 710 762 IPR002110 GO:0005515
Vivi5g05733 799 CDD PH_ACAP 295 432 - -
Vivi5g05733 799 SMART ANK_2a 708 737 IPR002110 GO:0005515
Vivi5g05733 799 SMART ANK_2a 741 770 IPR002110 GO:0005515
Vivi5g05733 799 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Vivi5g05733 799 Coils Coil 118 138 - -
Vivi5g05733 799 SUPERFAMILY Ankyrin repeat 649 787 IPR036770 -
Vivi5g05733 799 ProSiteProfiles Ankyrin repeat region circular profile. 708 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05733 Vivi-Chr5 160881583 160897504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05733 509 637 C2H2 Transcription Factor Family AT4G21160 43.846 2.61e-22 97.4