Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05729 ATGCCTTTTCAAGTGATGGATCAGAGGGGTGATAATTTTTTCGATGATATTTCATTTCATTCTGAGAGGAACGTTGGATTGAGGAAGGCGAAATTCATGAATGTCCAACACCCTCAAGGAATGAATGGAATGATGGCACCATCTGGCAACACTTTGAATGGCTCATCGCCCTTTGAAGTAAACGCAAAATCTGGATTTCCGATGTCACAGACTAATCCATCTGAGGGGAGTGTAGAAAAGCTACATATTGGTGTGGAACGAGACATTGCTGATGTATTGAAAGGTTCCAAAGAATCATTTCATTACAATCCACATTCATGGGGTGATGTTTTTAGGCAGTCAGCACCGACCTCACATCGTTTAATCGGGAACAAGCTTGTTGCGAATAACGCTGTCCATCGAGAAAGTAGTTTGTTCTCAAGCTCACTGTCGGACATGTTTACCAAAAACTTGAATTTATTGGGGAATGATCTTCTGTCGGACAAGCCGGCTGCTTCTGGTTCCCTTCTGGAGGAAGAGCCGTATAAATCTCTTGAAGAGATGGAGGCTCATTATATACATAATCTCCTTCCTGATGAAGATGATCTATTTTCTGGTGTTGTTGATGACTTAGAATACAATTCTCATACTAGGACGAACGACGATTCCGAAGATTTTGATTTGTTTAGCAGCGGTGGAGGCTTGGAGCTGGAAGGAGATGAACATTTAAGCTCGCTGAAAAGAGCAACTGGATTGGATGGAGATAACGGTTTCTTCGGAGGTTCTAAAGGAAAACTTCCTTTTGTTGAACAGCCTTCAAGAACACTTTTTGTTAGAAACATCAATAGCAACGTTGAAGATTTTGAGCTGAAGACTCTATTTGAGCAATACGGAGATATCAGAACTATTTATGCGGCTTGCAAGCATCGTGGGTTTGTCATGATTTCTTATTTTGATCTAAGGGCTGCACAGAAAGCTATGCAAGCCCTTCAAAATAGGCCATTGAGGTCTAGGAAGCTGGATATACATTATTCGATTCCGAAGGTTAATGCTCCAGAGAAGGATATTGGCCATGGCACACTGATGTTATCTGGTCTCGATTCATCTGTTTTAAACGACGAAATTAAACATATCTTTGGATTTTATGGTGAAATCAAAGAAATCTATGAATATCAAGAAATGAAGCATCTCAAGTTTATTGAGTTTTATGACGTGCGAGCTGCTGAAGCTGCACTCCGGGCATTGAACCGGATTGAATTTGCTGGGAAGCAGATCAAGCTGGAACCTGGCCATCCTAGGTTTGCAACACGTCTGATACAGCAGTCTCATAAGGTGCAAGATGAACGAGATCTTGGTCAGAGCCTTGTTGACAACTTACAACTACGACAAAAGCCAACCCTGTCGTCTGGAGTAATTGATTCTTCTGGCTTGGAAAATGGATACAACCAGAGATTTCAATCTGCAATGCGGCAACAGCATTTGAATGGATTTGCCGATAATGCCTTCTTTCATGCCAATTCCAACGTTCAAAACGCTTTGAGAGGGGCATCGGTTGGAAAAGTTTCTGGTGTTTCCGAGTCCACTAACCTCGTCGATGCAATGAAATTTGCGTCTAGTCCAACAACAGCATTTCATCCTCATTCTCTACCAGAGTATCATGCTGGCTTGTCTAATGCTAGTCCTTATAACTTTTCAAGCACCATTGGCAGCAAGGCTGGTAATATAGGCGCTGGAATGACGGAACTTAGCAGAGGAATCAACTCGGTTGGGAACTTAGCAGAATTCAATGGAGGAGGGTCATCAGGAAACGGCATCCGCGCGCACCATGGGCTAAATCATATGTGGAGCAGCTCCAATTCACATCAGCAATCTTCACCAAGTAACATGCCTTGGCAGAAAACCCCGCCATTTGCAAACGGTTCTCCAGGCTTGCCTCAGATGTCAAGCTTTGCTAGAACACCGCCTCATATGCTGAGAGCACAACATTTGGACCATCATGTTGGATCGGCACCGGTTGTTACAGGCTCTCCTTGGGACAGGAAAAACTCTTACATAGGAGAGTCTCCTGAGACTTCTGGTTTTCACTTGGGTTCTCCTGGAAATGGAGGTTTTCATGGCTCTTGGCAAATGCGTTCCATGGACTTTTCTCCTCATAATAACATGTTTTCACATGTTGGTGGGAACAGTACTGAACTATCGTCCAGTGCTGGTCAGAGCTCGCCTAATCCGTTGTCACATATTCTATACGGGAGACAACTTCCTTCAACTACTGTGTCAAAATTTGATCCTACCAATGATCGAATGAGAAATGTTTATAGCCGTAAAAGTGAAGCAAACACCGTAAGCCTGGCTGATAGGAAACAATATGAACTTGATCTCGGCCGCATAATGCGTGGAGAAGATATCCGAACAACACTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTACTTGTTGCCATAGACGAGCAATGTCGGGGAACTTATGACTTTCTGTATTTACCAATTGACTTCAAGAACAAATGTAATGTTGGATACGCATTCATAAATATGACCGATCCTGCTCAAATTGTTCCTTTCCACCAGGCTTTCCACGGTAAAAAGTGGGAGAAGTTCAACAGTGAGAAAGTAGCATCACTTGCATATGCCCGAATTCAAGGAAGAGCTTCTCTTGTCGCTCATTTCCAGAATTCAAGCCTGATGAATGAGGATAAACGTTGCCGCCCTATTCTCTTCCAAACAGAAGGCCCAAATGCTGGCGATATGGAGCCTTTCCCCATCGGAGCCAATGTTAGAGTTCGACCTGGAAAAATTCGCAACGCTGGCAACGAAGATAATCGCGTCCAAGTCCCTCCTTCAACTTTAGCAAGCGGAGAAGAGTCTGCCAACGAAAACTCCGCAAACGGAAACTCCGACTGA 2907 0.4338 MPFQVMDQRGDNFFDDISFHSERNVGLRKAKFMNVQHPQGMNGMMAPSGNTLNGSSPFEVNAKSGFPMSQTNPSEGSVEKLHIGVERDIADVLKGSKESFHYNPHSWGDVFRQSAPTSHRLIGNKLVANNAVHRESSLFSSSLSDMFTKNLNLLGNDLLSDKPAASGSLLEEEPYKSLEEMEAHYIHNLLPDEDDLFSGVVDDLEYNSHTRTNDDSEDFDLFSSGGGLELEGDEHLSSLKRATGLDGDNGFFGGSKGKLPFVEQPSRTLFVRNINSNVEDFELKTLFEQYGDIRTIYAACKHRGFVMISYFDLRAAQKAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDEIKHIFGFYGEIKEIYEYQEMKHLKFIEFYDVRAAEAALRALNRIEFAGKQIKLEPGHPRFATRLIQQSHKVQDERDLGQSLVDNLQLRQKPTLSSGVIDSSGLENGYNQRFQSAMRQQHLNGFADNAFFHANSNVQNALRGASVGKVSGVSESTNLVDAMKFASSPTTAFHPHSLPEYHAGLSNASPYNFSSTIGSKAGNIGAGMTELSRGINSVGNLAEFNGGGSSGNGIRAHHGLNHMWSSSNSHQQSSPSNMPWQKTPPFANGSPGLPQMSSFARTPPHMLRAQHLDHHVGSAPVVTGSPWDRKNSYIGESPETSGFHLGSPGNGGFHGSWQMRSMDFSPHNNMFSHVGGNSTELSSSAGQSSPNPLSHILYGRQLPSTTVSKFDPTNDRMRNVYSRKSEANTVSLADRKQYELDLGRIMRGEDIRTTLMIKNIPNKYTSKMLLVAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPAQIVPFHQAFHGKKWEKFNSEKVASLAYARIQGRASLVAHFQNSSLMNEDKRCRPILFQTEGPNAGDMEPFPIGANVRVRPGKIRNAGNEDNRVQVPPSTLASGEESANENSANGNSD 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05729 968 CDD RRM3_MEI2_like 799 884 IPR034454 -
Vivi5g05729 968 MobiDBLite consensus disorder prediction 942 968 - -
Vivi5g05729 968 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 340 IPR000504 GO:0003723
Vivi5g05729 968 CDD RRM1_MEI2_like 266 341 IPR034453 -
Vivi5g05729 968 SUPERFAMILY RNA-binding domain, RBD 264 423 IPR035979 GO:0003676
Vivi5g05729 968 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 352 425 IPR000504 GO:0003723
Vivi5g05729 968 SUPERFAMILY RNA-binding domain, RBD 798 882 IPR035979 GO:0003676
Vivi5g05729 968 PANTHER RNA RECOGNITION MOTIF-CONTAINING 75 941 - -
Vivi5g05729 968 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 333 IPR000504 GO:0003723
Vivi5g05729 968 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 354 419 IPR000504 GO:0003723
Vivi5g05729 968 SMART rrm1_1 353 421 IPR000504 GO:0003723
Vivi5g05729 968 SMART rrm1_1 268 336 IPR000504 GO:0003723
Vivi5g05729 968 SMART rrm1_1 798 874 IPR000504 GO:0003723
Vivi5g05729 968 FunFam Protein MEI2-like 1 351 445 - -
Vivi5g05729 968 Gene3D - 351 447 IPR012677 -
Vivi5g05729 968 Gene3D - 261 350 IPR012677 -
Vivi5g05729 968 MobiDBLite consensus disorder prediction 933 968 - -
Vivi5g05729 968 Pfam RNA recognition motif 2 796 892 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05729 Vivi-Chr5 160787091 160793236 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05729 264 418 Eukaryotic Initiation Factors Gene Family AT3G16380 26.705 3.11e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05729 - - gmx:100797893 1296.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05729 5 160787091 160793236 Vivi3g02253 3 37085029 37092403 PCT