Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05728 ATGCCTTTTCAAGTGATGGATCAGAGGGGTGATAATTTTTTCGATGATATTTCATTTCATTCTGAGAGGAACGTTGGATTGAGGAAGGCGAAATTCATGAATGTCCAACACCCTCAAGGAATGAATGGAATGATGGCACCATCTGGCAACACTTTGAATGGCTCATCGCCCTTTGAAGTAAACGCAAAATCTGGATTTCCGATGTCACAGACTAATCCATCTGAGGGGAGTGTAGAAAAGCTACATATTGGTGTGGAACGAGACATTGCTGATGTATTGAAAGGTTCCAAAGAATCATTTCATTACAATCCACATTCATGGGGTGATGTTTTTAGGCAGTCAGCACCGACCTCACATCGTTTAATCGGGAACAAGCTTGTTGCGAATAACGCTGTCCATCGAGAAAGTAGTTTGTTCTCAAGCTCACTGTCGGACATGTTTACCAAAAACTTGAATTTATTGGGGAATGATCTTCTGTCGGACAAGCCGGCTGCTTCTGGTTCCCTTCTGGAGGAAGAGCCGTATAAATCTCTTGAAGAGATGGAGGCTCATTATATACATAATCTCCTTCCTGATGAAGATGATCTATTTTCTGGTGTTGTTGATGACTTAGAATACAATTCTCATACTAGGACGAACGACGATTCCGAAGATTTTGATTTGTTTAGCAGCGGTGGAGGCTTGGAGCTGGAAGGAGATGAACATTTAAGCTCGCTGAAAAGAGCAACTGGATTGGATGGAGATAACGGTTTCTTCGGAGGTTCTAAAGGAAAACTTCCTTTTGTTGAACAGCCTTCAAGAACACTTTTTGTTAGAAACATCAATAGCAACGTTGAAGATTTTGAGCTGAAGACTCTATTTGAGCAATACGGAGATATCAGAACTATTTATGCGGCTTGCAAGCATCGTGGGTTTGTCATGATTTCTTATTTTGATCTAAGGGCTGCACAGAAAGCTATGCAAGCCCTTCAAAATAGGCCATTGAGGTCTAGGAAGCTGGATATACATTATTCGATTCCGAAGGTTAATGCTCCAGAGAAGGATATTGGCCATGGCACACTGATGTTATCTGGTCTCGATTCATCTGTTTTAAACGACGAAATTAAACATATCTTTGGATTTTATGGTGAAATCAAAGAAATCTATGAATATCAAGAAATGAAGCATCTCAAGTTTATTGAGTTTTATGACGTGCGAGCTGCTGAAGCTGCACTCCGGGCATTGAACCGGATTGAATTTGCTGGGAAGCAGATCAAGCTGGAACCTGGCCATCCTAGTCTGATACAGCAGTCTCATAAGGTGCAAGATGAACGAGATCTTGGTCAGAGCCTTGTTGACAACTTACAACTACGACAAAAGCCAACCCTGTCGTCTGGAGTAATTGATTCTTCTGGCTTGGAAAATGGATACAACCAGAGATTTCAATCTGCAATGCGGCAACAGCATTTGAATGGATTTGCCGATAATGCCTTCTTTCATGCCAATTCCAACGTTCAAAACGCTTTGAGAGGGGCATCGGTTGGAAAAGTTTCTGGTGTTTCCGAGTCCACTAACCTCGTCGATGCAATGAAATTTGCGTCTAGTCCAACAACAGCATTTCATCCTCATTCTCTACCAGAGTATCATGCTGGCTTGTCTAATGCTAGTCCTTATAACTTTTCAAGCACCATTGGCAGCAAGGCTGGTAATATAGGCGCTGGAATGACGGAACTTAGCAGAGGAATCAACTCGGTTGGGAACTTAGCAGAATTCAATGGAGGAGGGTCATCAGGAAACGGCATCCGCGCGCACCATGGGCTAAATCATATGTGGAGCAGCTCCAATTCACATCAGCAATCTTCACCAAGTAACATGCCTTGGCAGAAAACCCCGCCATTTGCAAACGGTTCTCCAGGCTTGCCTCAGATGTCAAGCTTTGCTAGAACACCGCCTCATATGCTGAGAGCACAACATTTGGACCATCATGTTGGATCGGCACCGGTTGTTACAGGCTCTCCTTGGGACAGGAAAAACTCTTACATAGGAGAGTCTCCTGAGACTTCTGGTTTTCACTTGGGTTCTCCTGGAAATGGAGGTTTTCATGGCTCTTGGCAAATGCGTTCCATGGACTTTTCTCCTCATAATAACATGTTTTCACATGTTGGTGGGAACAGTACTGAACTATCGTCCAGTGCTGGTCAGAGCTCGCCTAATCCGTTGTCACATATTCTATACGGGAGACAACTTCCTTCAACTACTGTGTCAAAATTTGATCCTACCAATGATCGAATGAGAAATGTTTATAGCCGTAAAAGTGAAGCAAACACCGTAAGCCTGGCTGATAGGAAACAATATGAACTTGATCTCGGCCGCATAATGCGTGGAGAAGATATCCGAACAACACTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTACTTGTTGCCATAGACGAGCAATGTCGGGGAACTTATGACTTTCTGTATTTACCAATTGACTTCAAGAACAAATGTAATGTTGGATACGCATTCATAAATATGACCGATCCTGCTCAAATTGTTCCTTTCCACCAGGCTTTCCACGGTAAAAAGTGGGAGAAGTTCAACAGTGAGAAAGTAGCATCACTTGCATATGCCCGAATTCAAGGAAGAGCTTCTCTTGTCGCTCATTTCCAGAATTCAAGCCTGATGAATGAGGATAAACGTTGCCGCCCTATTCTCTTCCAAACAGAAGGCCCAAATGCTGGCGATATGGAGCCTTTCCCCATCGGAGCCAATGTTAGAGTTCGACCTGGAAAAATTCGCAACGCTGGCAACGAAGATAATCGCGTCCAAGTCCCTCCTTCAACTTTAGCAAGCGGAGAAGAGTCTGCCAACGAAAACTCCGCAAACGGAAACTCCGACTGA 2895 0.4335 MPFQVMDQRGDNFFDDISFHSERNVGLRKAKFMNVQHPQGMNGMMAPSGNTLNGSSPFEVNAKSGFPMSQTNPSEGSVEKLHIGVERDIADVLKGSKESFHYNPHSWGDVFRQSAPTSHRLIGNKLVANNAVHRESSLFSSSLSDMFTKNLNLLGNDLLSDKPAASGSLLEEEPYKSLEEMEAHYIHNLLPDEDDLFSGVVDDLEYNSHTRTNDDSEDFDLFSSGGGLELEGDEHLSSLKRATGLDGDNGFFGGSKGKLPFVEQPSRTLFVRNINSNVEDFELKTLFEQYGDIRTIYAACKHRGFVMISYFDLRAAQKAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDEIKHIFGFYGEIKEIYEYQEMKHLKFIEFYDVRAAEAALRALNRIEFAGKQIKLEPGHPSLIQQSHKVQDERDLGQSLVDNLQLRQKPTLSSGVIDSSGLENGYNQRFQSAMRQQHLNGFADNAFFHANSNVQNALRGASVGKVSGVSESTNLVDAMKFASSPTTAFHPHSLPEYHAGLSNASPYNFSSTIGSKAGNIGAGMTELSRGINSVGNLAEFNGGGSSGNGIRAHHGLNHMWSSSNSHQQSSPSNMPWQKTPPFANGSPGLPQMSSFARTPPHMLRAQHLDHHVGSAPVVTGSPWDRKNSYIGESPETSGFHLGSPGNGGFHGSWQMRSMDFSPHNNMFSHVGGNSTELSSSAGQSSPNPLSHILYGRQLPSTTVSKFDPTNDRMRNVYSRKSEANTVSLADRKQYELDLGRIMRGEDIRTTLMIKNIPNKYTSKMLLVAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPAQIVPFHQAFHGKKWEKFNSEKVASLAYARIQGRASLVAHFQNSSLMNEDKRCRPILFQTEGPNAGDMEPFPIGANVRVRPGKIRNAGNEDNRVQVPPSTLASGEESANENSANGNSD 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05728 964 CDD RRM3_MEI2_like 795 880 IPR034454 -
Vivi5g05728 964 SMART rrm1_1 353 421 IPR000504 GO:0003723
Vivi5g05728 964 SMART rrm1_1 268 336 IPR000504 GO:0003723
Vivi5g05728 964 SMART rrm1_1 794 870 IPR000504 GO:0003723
Vivi5g05728 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 340 IPR000504 GO:0003723
Vivi5g05728 964 MobiDBLite consensus disorder prediction 938 964 - -
Vivi5g05728 964 CDD RRM1_MEI2_like 266 341 IPR034453 -
Vivi5g05728 964 SUPERFAMILY RNA-binding domain, RBD 264 422 IPR035979 GO:0003676
Vivi5g05728 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 352 425 IPR000504 GO:0003723
Vivi5g05728 964 FunFam Protein MEI2-like 1 351 445 - -
Vivi5g05728 964 Gene3D - 261 349 IPR012677 -
Vivi5g05728 964 SUPERFAMILY RNA-binding domain, RBD 794 878 IPR035979 GO:0003676
Vivi5g05728 964 PANTHER RNA RECOGNITION MOTIF-CONTAINING 75 937 - -
Vivi5g05728 964 Pfam RNA recognition motif 2 792 888 IPR007201 -
Vivi5g05728 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 333 IPR000504 GO:0003723
Vivi5g05728 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 354 419 IPR000504 GO:0003723
Vivi5g05728 964 Gene3D - 350 446 IPR012677 -
Vivi5g05728 964 MobiDBLite consensus disorder prediction 929 964 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05728 Vivi-Chr5 160787091 160793236 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05728 264 418 Eukaryotic Initiation Factors Gene Family AT3G16380 26.705 3.49e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05728 - - gmx:106798747 1289.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05728 5 160787091 160793236 Vivi5g05728 5 160787091 160793236 ECH