Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05657 ATGGAGGAGGAGGATGAGATTCAAGCACAAAATTCATGTAAATTCCCAAGAGTTGAAAATGAACAAGAGAATGGGAATTTGAACAGGTTCAATAGTTGGCACCATCATTCCTCTAGGATCATAAGGGTGTCAAGAGCTTCTGGTGGAAAAGATAGGCACAGCAAGGTTATGACTTCAAAGGGTTTAAGAGACAGAAGGGTTAGGCTTTCTGTTACAACAGCTATTCAGTTCTATGATCTTCAAGATAGGTTGGGTTATGACCAACCTAGTAAAGCTGTTGAATGGCTTATAAAATCTGCTTCTGATGCTATTTCAGAATTACCTTCACTCAACAACTCATTGTTCACTGATCCTAGTGATCAACAAGGTGGTGTTGATTCATCTCATGATGCTGAAATGGTTGTGGAGAATAATGGTGACAACAATTATCATCAAAATCAAAGTCAGAATCTTTCTTTGTCTAAATCTGGTTGTAGTAGCACTTCTGAGACTAGTAAGGGTTCGGGTTTATCGCTTTCGAGATCTGATGTTCGTGTCAGCCGGGTTAAGGCGAGGGAGAGAGCGAGAGAAAGAACGGCGAAAGAGAAGGAAAAAGAAAATCATGATAGTGTTAGTGTAAGTGTTAATCCTCTTCATCATCAACATCATCAACACCAGAATGTTAATGTTAACTCTTGTTCGATTTCTCAAACGGCTTCGTTCACCGAACTTCTTACCGGTGGAATCAACAATGTAGCTGCAAGGAGTCCAAGAAGGTCAGTTGAAGAAGCTAATTTCTTCAACAAAGCTCGACAACAACAGCAGCAACAACAGCAATGGAGTTCTTCTTCAGCACCAATGGATCATTACTTTAGTCCAGTGCTAATAGGAACTCCTTCATCATCAAGAACACATCATCATCATCAACAACATCATCAATTAGGACATTCACTTCATGATCATCAATCCATGACAATGTCCAACTCAGTTTCACCGTTCAGTAGCGGTGAAAACCATTCTGCAGATCAGCATCAGCATCAGATGCAGCATCAGTTTTCTTTCATACCTGATCATGTGATGCAAAACGTGGTCACTTCTTCTTCTACTCAACCAAGCGGGAACAACCATAATAACGATTATAATCTCAACTTTACGATCTCATCGGGCCTTGCTGGTTACAATAGGGGGACCCTTCAGTCCAATTCACCGTCTCTTTTATCTCATCTTCAGAGGTTTTCAGTTTCATCTTTAGACGGATCCAACAATCTACCTTTTTTCATGGCAGGAGGAGGAGGCGGTGGCGCTTCCACTTCTTCCTCTCCTGCTTCTGGTTCACCTGCTCCTACTACAATGGAGAATAATCATCATCATCATCATCACCATCACCAGATTCAACAAAACCATCCATTTTCATCTGTTTTTGATGGTAGCAGCTTGCAACTCTACTCAGATCAGAAAGGAAAACCCAAAAACTGA 1455 0.4103 MEEEDEIQAQNSCKFPRVENEQENGNLNRFNSWHHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSASDAISELPSLNNSLFTDPSDQQGGVDSSHDAEMVVENNGDNNYHQNQSQNLSLSKSGCSSTSETSKGSGLSLSRSDVRVSRVKARERARERTAKEKEKENHDSVSVSVNPLHHQHHQHQNVNVNSCSISQTASFTELLTGGINNVAARSPRRSVEEANFFNKARQQQQQQQQWSSSSAPMDHYFSPVLIGTPSSSRTHHHHQQHHQLGHSLHDHQSMTMSNSVSPFSSGENHSADQHQHQMQHQFSFIPDHVMQNVVTSSSTQPSGNNHNNDYNLNFTISSGLAGYNRGTLQSNSPSLLSHLQRFSVSSLDGSNNLPFFMAGGGGGGASTSSSPASGSPAPTTMENNHHHHHHHHQIQQNHPFSSVFDGSSLQLYSDQKGKPKN 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05657 484 MobiDBLite consensus disorder prediction 137 175 - -
Vivi5g05657 484 MobiDBLite consensus disorder prediction 426 444 - -
Vivi5g05657 484 MobiDBLite consensus disorder prediction 312 336 - -
Vivi5g05657 484 MobiDBLite consensus disorder prediction 459 478 - -
Vivi5g05657 484 ProSiteProfiles TCP domain profile. 49 107 IPR017887 -
Vivi5g05657 484 Pfam TCP family transcription factor 48 198 IPR017887 -
Vivi5g05657 484 MobiDBLite consensus disorder prediction 178 203 - -
Vivi5g05657 484 ProSiteProfiles R domain profile. 178 196 IPR017888 -
Vivi5g05657 484 MobiDBLite consensus disorder prediction 263 281 - -
Vivi5g05657 484 MobiDBLite consensus disorder prediction 424 484 - -
Vivi5g05657 484 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 27 355 IPR005333 GO:0003700
Vivi5g05657 484 MobiDBLite consensus disorder prediction 263 336 - -
Vivi5g05657 484 MobiDBLite consensus disorder prediction 137 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05657 Vivi-Chr5 159961297 159967492 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05657 28 484 TCP Transcription Factor Family AT4G18390 39.457 2.22e-74 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vivi5g05657 TCP 4.7e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05657 - - mtr:120577367 541.191