Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05648 ATGACATTAATTGAAGAGTGTTCGCAATTGATTTTCTTGTTTGGAAATGGATTTGAATGGAGTCTTGCTAAAAGTCTGTCAACACACATGGCCTCTCAGCAGATAACAGAAGAAGCTGTTTACCTTTGCACTGGAAATCCATTGCCCAAAGACATTGAGCAAATATCTTACTGGCTTCTAAATGAACAATATTCAGAGAGCTTTAAAAGAATTAATGATATGAAAACAAGGAAAGGACTGACCCTTGTTGATATTGTAAGAGAAGTGACAATCTTGACATTCCAGCTCAATCGCAATGCCTTCTTCACATGCCTATGTGTTCTGCTCTTTGCAATGAGTCAACCCTGCAGTATAATCCTGATAAAGGGAAGTATGAAAAAATTGACCATATCAAAGCCTGTTTCGCATCCCTCTGAGCTTCCTAAGTGGAATTATGATAGATCTAGCACTGGACAAGCCCTTGGTGAAGATAGTGAAGTGATCCTATATCCTCAAGCAATTTTCAAAGATCATTTCCGTGGAGGAAACAATATAATGGTCTTTGCGATGCGTATACACCAGTAG 564 0.3865 MTLIEECSQLIFLFGNGFEWSLAKSLSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQYSESFKRINDMKTRKGLTLVDIVREVTILTFQLNRNAFFTCLCVLLFAMSQPCSIILIKGSMKKLTISKPVSHPSELPKWNYDRSSTGQALGEDSEVILYPQAIFKDHFRGGNNIMVFAMRIHQ 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05648 187 SUPERFAMILY Glutamine synthetase, N-terminal domain 126 182 IPR036651 GO:0004356|GO:0006542|GO:0006807
Vivi5g05648 187 Gene3D - 117 186 IPR036651 GO:0004356|GO:0006542|GO:0006807
Vivi5g05648 187 Gene3D - 48 106 - -
Vivi5g05648 187 SUPERFAMILY post-AAA+ oligomerization domain-like 47 111 IPR008921 GO:0003677|GO:0006260
Vivi5g05648 187 PANTHER GLUTAMINE SYNTHETASE 125 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05648 Vivi-Chr5 159868140 159872738 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05648 3 96 Core DNA Replication Machinery Family AT1G77470 49.038 3.10e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05648 K10756 - vvo:131639594 129.798