Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05638 ATGGGTGAAGTAAAACAACAAAGTATTCCCGCTTTGCCATGGATGCGAGCCCCCGTCGACGTCACGCTCTCTCAACAACTACCCCTTCATTCCGTCCCTTCTCTCCATCCTAAGTTGAAGTCAGCGTTGGAAGACATGGGGATCTCAAGTCTATTCCCAGTGCAAGTCGCAGTTTGGCATGAAACAGTTGGTCCTGGCAATTTTGAGCGAGACGTTTGTGTTAACTCACCCACCGGAAGTGGAAAAACCCTCTCCTACGCTCTCCCCTTAGTGCAGATACTCTCAGGCCGCATCTCCAAATGCCTTCGTGCCTTAATTGTGGTCCCCACTCGTGACCTTGCTTTGCAGGTTAAGCAAGTCTTCGACGCCGTTGCTTCTCCATTAGGCCTGCGTGTTGGTTTGGCGGTTGGTCAATCGTCATTAGCAGACGAGATTTCGGAGCTCGTTGACATGCCGACACGTGATATTGGCATGTGCTATGATTCGCATTGCGTTTCGCCTCCTCGCTTTCAGAGTAAGGTTGATATATTAGTAGCAACCCCTGGTAGGCTTATGGATCACATTAATACAACCATAGGCTTCACGCTTGAGCATCTTCATTATCTTGTGGTTGATGAAACAGATCGATTGCTTCGTGAGGCATACCAGTCATGGTTGCCTACTGTGCTTGAACTTACCCAATCTAATGATGATGGTTTTTCCCAACTGACTGATTCTTTTTTCCCCTGCTCTGTTGGTGCATTAAGAACCAGAAGAAGATGTGGAGTTGAGAGGGGATTCAAGGACAAGCCTTATCCCAGGCTGGCAAAGATGGTTCTATCCGCGACATTAACTCAGGATCCAGGCAGGCTTATTCAGCTTAATTTGCATCACCCTTTGTTATTGAAAGCTGGAGAAATGCGTTATCGGCTCCCAGAAAATTTGGAATCTTATAAACTGGTTTGTGAAACAAAGGTCAAACCCTTGTATTTAATTGCCCTTTTGAAATCCCTGGGAGAAGAAAAATGCCTAGTTTTTACAAAATCTGTGGATTCAACATATCGTCTTTGCAAATTGCTGAATTGTTTTGAAGATCTGCAAATTGATATCAAAGAGTATTCTAGTCTTCAACATCAACGTGTAAGAAGTAAGACATTGAACGAATTTCGGAAAGGGATGTTTCAAGTGCTTGTATCTTCTGATGCGTTGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGACGTACCCAAATTCATAAAAACTTATGTTCATCGGGCTGGTAGGACTGCGAGAGCAGGCCAGGCTGGACGTTGCTTCACATTGATGTCAGAAGATGAGGTTCGACGATTTAAGAAGTTAATGCGAAAGGCTGAGGGTGGTTCTTGTCTTGAGCATATTGTTCCGTCCAGTCAAATTGAAGCACTCAGTACTACCTACCAATCAGCACTTACAAAATATAAGGAGATAATTTCAAAGACGCGAAAGAAACCCAAGGCTTAG 1494 0.4438 MGEVKQQSIPALPWMRAPVDVTLSQQLPLHSVPSLHPKLKSALEDMGISSLFPVQVAVWHETVGPGNFERDVCVNSPTGSGKTLSYALPLVQILSGRISKCLRALIVVPTRDLALQVKQVFDAVASPLGLRVGLAVGQSSLADEISELVDMPTRDIGMCYDSHCVSPPRFQSKVDILVATPGRLMDHINTTIGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELTQSNDDGFSQLTDSFFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATLTQDPGRLIQLNLHHPLLLKAGEMRYRLPENLESYKLVCETKVKPLYLIALLKSLGEEKCLVFTKSVDSTYRLCKLLNCFEDLQIDIKEYSSLQHQRVRSKTLNEFRKGMFQVLVSSDALTRGMDVEGVRNVINYDVPKFIKTYVHRAGRTARAGQAGRCFTLMSEDEVRRFKKLMRKAEGGSCLEHIVPSSQIEALSTTYQSALTKYKEIISKTRKKPKA 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05638 497 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 295 IPR014001 -
Vivi5g05638 497 SMART helicmild6 347 431 IPR001650 -
Vivi5g05638 497 Pfam DEAD/DEAH box helicase 53 281 IPR011545 GO:0003676|GO:0005524
Vivi5g05638 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 452 IPR027417 -
Vivi5g05638 497 Gene3D - 19 298 IPR027417 -
Vivi5g05638 497 CDD DEADc_DDX51 39 295 - -
Vivi5g05638 497 SMART ultradead3 47 311 IPR014001 -
Vivi5g05638 497 Gene3D - 306 497 IPR027417 -
Vivi5g05638 497 PANTHER RNA HELICASE 35 467 - -
Vivi5g05638 497 CDD SF2_C_DEAD 308 439 - -
Vivi5g05638 497 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 472 IPR001650 -
Vivi5g05638 497 Pfam Helicase conserved C-terminal domain 320 431 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05638 Vivi-Chr5 159792054 159800579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05638 71 446 Eukaryotic Initiation Factors Gene Family AT3G13920 24.093 4.04e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05638 K14807 - qsa:O6P43_013012 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05638 5 159792054 159800579 Vivi5g05638 5 159792054 159800579 ECH