Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05634 ATGGCGAAGCAGATCCACGAGATCAAGGATTTTCTTCTGACGGCGCGTAGAAAGGACGCGAGATCAGTGAAAATCAAGAGGAGCAAGGATGTGGTGAAGTTCAAGGTTCGTTGCTCGAAGTATTTGTACACACTTTGTGTGTTTGATACTGATAAGGCTGATAAGTTGAAGCAATCTCTTCCTCCCGGTTTGACTGTTCAAGATCTGTAG 210 0.4476 MAKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDTDKADKLKQSLPPGLTVQDL 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05634 69 PANTHER 60S RIBOSOMAL PROTEIN L38 1 68 IPR002675 GO:0003735|GO:0005840|GO:0006412
Vivi5g05634 69 FunFam 60S ribosomal protein L38 1 69 - -
Vivi5g05634 69 Gene3D - 1 69 IPR038464 -
Vivi5g05634 69 Pfam Ribosomal L38e protein family 3 68 IPR002675 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05634 Vivi-Chr5 159697198 159697794 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05634 1 69 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 91.304 2.30e-42 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05634 K02923 - qsa:O6P43_007781 134.42