Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05633 ATGAAGCTTTCTTCAGCTGGTTTTAGTCCTCCACCTCAGGAAGGAGAAAAAAGGGTTCTAGATTCAGAACTTTGGCATGCTTGTGCTGGTCCTCTTGTTTCTTTGCCAGCTGATGGAAGCCGCGTCGTCTACTTTCCACAAGGTCATAGTGAACAGGTTGCTGTATCTACCAACAGGGAAGTTGATACATATATTCCCAATCCAAGCTTACCTCCCCAGCTTATTTGTCAACTTCATAATTTGACTATGCATGCAGATACAGAGACGGATGAAGTGTATGCGCAGATGACCTTGCAACCTCTAAATCCTGACGAGCAAAAGGAGGCATATCATCCTGCAGAGTTGGGAACTGCAAATAAACAGCCAACAAACTACTTTTGCAAAATTTTGACTGCCAGTGATACAAGCACTCATGGGGGTTTCTCTGTTCCTCGCCGCGCAGCTGAAAAAGTTTTCCCTCCACTGGACTTTTCTCAACAGCCTCCTGCTCAAGAGTTGATTGCAAGGGATTTGCATGGTAATGACTGGAAATTCAAACATATCTTCCGCGGCCAGCCCAAAAGGCATTTGCTTACAACTGGGTGGAGTGTCTTCGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATATGGAATGAAAAAAATCAGTTGCTTCTAGGCATTCGGCGTGCCAATCGACCACAACATATGATGCCTTCATCTGTATTGTCAAGTGACAGCATGCACTTGGGGCTGCTTGCTGCTGCAGCTCACGCCGCTGCAACGAACAGTCGTTTCACCATTTTCTATAACCCACGTGCTAGCCCATCAGAATTTGTCATTCCCCTAGCAAAGTATGTTAAAGCTGTATATCACACTCGAGTTTCAGTTGGTATGCGCTTCAGAATGCTTTTTGAAACAGAAGAATCTAGTGTTCGGCGATACATGGGAACAATAACTGGCATCAGTGACCTGGATTCTGTCCGGTGGCCTAATTCACATTGGCGCTCAGTAAAGGTTGGGTGGGATGAATCAACAGCAGGTGAGAGGCAACCTAGAGTGTCTCTATGGGAAATTGAGCCATTAACAACATTTCCAATGTATCCATCTCCATTCCCCCTTAGGCTTAAAAGACCATGGCCTCCTGGACTTCCTTCATTCAATGGCTTGAAGGATGATGATTTTGGCATGAATTCTCCACTATTATGGCTTCGAGATGCAGATAGAGGGCTTCAAACTCTTAATTTTCAAGGGATGGGTGTTAATCCTTGGATGCAGGCGAGGCTCGATCCATCTATGATGAATTTGCAACCAGATATGTACCATGCTATGGCAGCTGCTGCACTTCAGGATATGAGGACTTTAGATCCTTCTAAACAGCATCCTGCTTCATTACTTCAATTTCAGCAGCCACAGAATTTTCCCAATGGTACTGCCGCGTTAATGCAGAGCCAGATGATGCAGCAATCTCAACCTCAGCACGCTTTTCCAAAAAGTCAAGAACATCAGCATCCATCTCAATCTCAGGCTCAAACCCAACAGTTCCAGCAGCTTCTTCAGCATCAGCATTCATTCACTAATCAAAATTATCATCATCTGCAACAGCAACAGCAGCAGCAGCAACATCAGCAACAGCATCAGCAGCAGCAACATCACCAACAGCAGCAGCAACATCAACAGCAGCAGCAGCAACAACAGCATCAACAGCAGCAACAACATCAACTTCAGCAGCAACAACAACAATCAAAACAGCAACAAGTTGTAGATCATCAGCAGATTCCAAATGCTGTCTCTACGATGTCTCAGTTTGTTTCGGCACCTCAATCTCAATCAACGCAGCCCATGCAAGCTATCTCTTCAATTGGCAATCAGCAACATTTTTCTGATTCAAATGGCAACCCTACAACTACTGCTATTGTTTCTCCTTTGCACAATATGTTAGGTTCATTTTCCAATGACGAAACATCTCACCTTCTAAACTTTCCTAAACCAAACTCTTGGGTTCCGGTTCAATCTTCGACAGCATGGCCCTCCAAGCGCGTTGCCTTGGATCCTCTCGTTTCTTCTGGAACATCTCATTATGTTCTGCCTCAAATGGAGCAGCTTGGGCAGTCGCAAACTACCATGTCTCAAAATGCTATTACCTTGCCACCATTTCCTGGTAGGGAGTGTGCTATCGAAGGGAACACTGATCCACAAAACCATCTTTTGTTCGGTTTTAACATAGAGCCCTCATCACATCTAGTGTATAACGAGATGTCAAACCTTAAGGGGGGTGTCAATAGCAACTGTGACTCATCAACTGTGCCTTTTCAATCTTCTGCCTACCTGAATAACACAGGCGCTGATTCTTCATTGAATAATGGAATGGCACATGGTGTTGGCGAGTCGGGATTCCTACAAACTTCTGAAAATGGAGGTCAAGGAAACTCACCAAACAAAACCTTTGTGAAGGTTTACAAGTCAGGGTCCTTCGGTAGATCGTTGGATATCACAAAATTCTCTAACTACCCCGAGCTACGCAGCGAGCTTGCTCGTATGTTTGGGCTTGAAGGTGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTTGTTGATCAAGAGAATGACGTTCTTCTCCTCGGTGATGGCCCGTGGCCGGAATTTGTAAATAGTGTATGGTGCATCAAGATACTTTCCCCTCAAGAAGTGCAGCACATGGGAAACAATGGACTAGAGCTTCTAAACTCAGCTCCAACTCAGAGGCTCTCTAATGGCATCTGTGATGACTACACCGGCCGCGAGGACCCTAGAACTTTAAGCACCGGATTAACATCCGTGGGGTCTTTAGACTACTGA 2832 0.4523 MKLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPADGSRVVYFPQGHSEQVAVSTNREVDTYIPNPSLPPQLICQLHNLTMHADTETDEVYAQMTLQPLNPDEQKEAYHPAELGTANKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQHMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGLKDDDFGMNSPLLWLRDADRGLQTLNFQGMGVNPWMQARLDPSMMNLQPDMYHAMAAAALQDMRTLDPSKQHPASLLQFQQPQNFPNGTAALMQSQMMQQSQPQHAFPKSQEHQHPSQSQAQTQQFQQLLQHQHSFTNQNYHHLQQQQQQQQHQQQHQQQQHHQQQQQHQQQQQQQQHQQQQQHQLQQQQQQSKQQQVVDHQQIPNAVSTMSQFVSAPQSQSTQPMQAISSIGNQQHFSDSNGNPTTTAIVSPLHNMLGSFSNDETSHLLNFPKPNSWVPVQSSTAWPSKRVALDPLVSSGTSHYVLPQMEQLGQSQTTMSQNAITLPPFPGRECAIEGNTDPQNHLLFGFNIEPSSHLVYNEMSNLKGGVNSNCDSSTVPFQSSAYLNNTGADSSLNNGMAHGVGESGFLQTSENGGQGNSPNKTFVKVYKSGSFGRSLDITKFSNYPELRSELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVWCIKILSPQEVQHMGNNGLELLNSAPTQRLSNGICDDYTGREDPRTLSTGLTSVGSLDY 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05633 943 Gene3D - 124 227 IPR015300 -
Vivi5g05633 943 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 586 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi5g05633 943 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Vivi5g05633 943 SUPERFAMILY CAD & PB1 domains 806 885 - -
Vivi5g05633 943 FunFam Auxin response factor 124 228 - -
Vivi5g05633 943 Pfam Auxin response factor 252 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi5g05633 943 CDD B3_DNA 125 226 IPR003340 GO:0003677
Vivi5g05633 943 SUPERFAMILY DNA-binding pseudobarrel domain 111 255 IPR015300 -
Vivi5g05633 943 Gene3D - 290 362 - -
Vivi5g05633 943 MobiDBLite consensus disorder prediction 526 564 - -
Vivi5g05633 943 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Vivi5g05633 943 Coils Coil 554 577 - -
Vivi5g05633 943 ProSiteProfiles PB1 domain profile. 810 894 IPR000270 GO:0005515
Vivi5g05633 943 SMART B3_2 126 228 IPR003340 GO:0003677
Vivi5g05633 943 FunFam Auxin response factor 290 362 - -
Vivi5g05633 943 MobiDBLite consensus disorder prediction 479 513 - -
Vivi5g05633 943 FunFam Auxin response factor 805 899 - -
Vivi5g05633 943 Gene3D - 806 899 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05633 Vivi-Chr5 159683588 159689947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05633 1 482 B3 DNA Binding Superfamily AT1G30330 83.811 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi5g05633 B3 6.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05633 - - vvo:131603524 1758.04