Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05629 ATGGGTCGTCGCAAAATTGAGATTGAGATGGTGAAAGATCCAAACACGAGGCAAGTCACCTTCTCAAAGCGTCGAACGGGCTTATTCAAAAAAGCAAATGAATTGACAATTTTGTGCGGAGCAGAAGTGGCTATTGTCGTGTTTTCTCCGGGTAACAAACCTTATTCTTTTGGTCATCCTGGAGTTGACGTTGTTGCGGCCAACTATCTCCAACAAGAGAATATACCAAATGATTCTCAAGAAAACTCATCTTCTTCTGATGCTCCCAATATGGAAAATTTGAACCAAGAACTTGCTGAGGTATTGGCTGAAATTCGAGAAAGTGAAAAACAAGCTGCGAAACATGATGAAATCTTGAAGAAAAACAATGTGAAAAAACTTTCTGAACTTGCAGAATTGAAAGATTCATATAAACAATTTCATGATATCGTAAAGTTGCGTCTTAGTGATCTTGAAATATCGGAATATATGATGCTTCTTGCTCGAGATCCAGTGGTAGGAGTAAAGGCGAAATCTGCGAAAAGGAAAAGAGGAAAAAATTAA 543 0.3812 MGRRKIEIEMVKDPNTRQVTFSKRRTGLFKKANELTILCGAEVAIVVFSPGNKPYSFGHPGVDVVAANYLQQENIPNDSQENSSSSDAPNMENLNQELAEVLAEIRESEKQAAKHDEILKKNNVKKLSELAELKDSYKQFHDIVKLRLSDLEISEYMMLLARDPVVGVKAKSAKRKRGKN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05629 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Vivi5g05629 180 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Vivi5g05629 180 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Vivi5g05629 180 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi5g05629 180 PANTHER MADS BOX PROTEIN 3 141 - -
Vivi5g05629 180 Gene3D - 14 85 IPR036879 GO:0003677|GO:0046983
Vivi5g05629 180 Coils Coil 91 118 - -
Vivi5g05629 180 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi5g05629 180 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi5g05629 180 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi5g05629 180 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05629 Vivi-Chr5 159594513 159601934 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05629 1 162 Type I MADS-box Gene Family AT2G34440 45.029 2.51e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi5g05629 SRF-TF 8.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05629 - - mtr:11439559 260.381