Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05625 ATGGAAATGGAAATAATATCAAGAGAAATCATCAAACCATCATCACCAACTCCTCCCCACCTTACAAATTTCCCCATTTCTTTCATAGATCACATCACTTTCCGTTACTATATGCCTTTTCTTTTCTTTTACAATGATACCAAAGTTTGTGACCAAAAATACAAAATCTCACACCTCAAAACTTCTTTATCTCAAACTCTATCCATATACTACCCCTTTGCTGGCAGGTTTAAAGATCAACGCTCGATCGAATGCAACGACAAAGGCGTGTCATTTCTAGTTGCAAATGTCACAAGAACAAAATTATCAACAATACTCGAAAACCCCAATGAAAAGTCGCTTAACCCTTTGTTTCCAGATGATTTGCAATGGAAAGTGATGGATTGGAATGAAAGTATTTTAGTCGTTCAGATAAATTGTTTTCCATGTGGAGGAATCGTAATAAGTGTGTGCGCGTGTCACAAAATTATAGATGCTACAACTGCTTTCAACTTCATGAACGATTGGTCCAAACTGAACCGCGAAAAAGAGTCAGAGTCAAAGTCAACATCGGCGTCATTGTTACCCTACGATCTGCTTTATGCTGGAGATACAATATTTTCACTTGAGAATATACCAAAATTTCCCGAAGTCAATTTTGTGATAGACAAAACAATAGTGTGCAAGAGGTTTGTGTTCGAAGCATCGAAGTTAAAGTTACTTAGAAACCTCGTAAATTCTAATTCTCAAGTTTTCGAAAATCCCACGCGTGTAGAAGTTGTTACCGCATTGATTTACAAGTGTGTGGTTTCTACATTAGGATTAAATTTCAAAACGACATCGCTTCAAATGGCGGTAAACCTTCGCAAAAGAATGATTCCTCCATTATCTAATAAGTGTGTAGGGAATTTAGTTTGGATCATGTTTATTGTGAACCCGGAACTACATGATTTGGAAATGAAAATTAGACAAGGGTTAAGTGAGTTTTGTGAGGTTTATCCTAAGAAATTTGGAGGTAAGGAAAAAGACTTGTCATTTATTTGTGAATGCTTGAAACAATTTACTACTCCAGTTATAGAGAGTGATGATAATCAGAGTTTGATTGCTTATGCTAGTTGGTGTAAGTTTCCAATGTATGAAGCTGATTTTGGGTGGGGAAAACCAATTTGGGTGACCACTAGTGCTTGTCCTGCGAGGAATGCGATAATTTTGATGGATACGAGTGATGGGGAGGGGATTGAAGTTATTGTGAGTATGGAAGAGAATGATATGCTGAGGTTTGAATGTGATGTGGAGCTGCTTCAATATGCCTCTTTAAATCCAAGTATTGTTTGA 1314 0.3699 MEMEIISREIIKPSSPTPPHLTNFPISFIDHITFRYYMPFLFFYNDTKVCDQKYKISHLKTSLSQTLSIYYPFAGRFKDQRSIECNDKGVSFLVANVTRTKLSTILENPNEKSLNPLFPDDLQWKVMDWNESILVVQINCFPCGGIVISVCACHKIIDATTAFNFMNDWSKLNREKESESKSTSASLLPYDLLYAGDTIFSLENIPKFPEVNFVIDKTIVCKRFVFEASKLKLLRNLVNSNSQVFENPTRVEVVTALIYKCVVSTLGLNFKTTSLQMAVNLRKRMIPPLSNKCVGNLVWIMFIVNPELHDLEMKIRQGLSEFCEVYPKKFGGKEKDLSFICECLKQFTTPVIESDDNQSLIAYASWCKFPMYEADFGWGKPIWVTTSACPARNAIILMDTSDGEGIEVIVSMEENDMLRFECDVELLQYASLNPSIV 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05625 437 PANTHER F21J9.9 4 431 - -
Vivi5g05625 437 Gene3D - 1 191 IPR023213 -
Vivi5g05625 437 Pfam Transferase family 2 426 - -
Vivi5g05625 437 Gene3D - 216 431 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05625 Vivi-Chr5 159544020 159545626 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05625 1 421 Monolignol Biosynthesis Gene Families AT5G48930 24.678 1.89e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05625 - - gmx:100806928 515.383