Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05622 ATGCACACTTGTTTGTTGAATGATTCTGAAACAAAAAAGATAAGAACGCGTGAAACTATTGTGAACCAATTAATCATGGAGATTGAAATTCTTTCTAGAGAAACCATCAAACCTTCATCACCAACTCCTTCTGATTTGAGAATCTACCCTCTTTCTTTTATTGATAATGCCTTTTACCGCAAGTATGTGCCAGTTATTTTCTTCTACAACACAAACGAAGTTAGTAACCAAACTTCTAAAGTATCACAACTCCGAAATTCCCTATCTCATGTTCTTTCCAAATACTATCATTTTGCTGGTAGATTGAAAGACAAAACTACCATTGAATGCAATGATCAAGGTGTGTCATTTTTCATCACAAAGATACAAAACAATTTATCAGAAATCGTCCAAAACCCGACCGAAGAATCGGTGAACTCATTGTTTCCAGATGAATTGCAATGGAAAGTGATGGATTGGAGTGGGAGTTTATTTGTCATTCAAGTCCATTGTTTCGCATGTGGAGGAATTGCGATAAGTATTCTCATGACTCACAAGGTTGGTGATGGTACCACTCTGTTCAAATTTTTGAACGACTGGGCCATCATCAACCAAAAACTAGAACAAGAAGACTTATCAATATTATTATCACCCCTTTCTTTACAAGAAGGGGGAGCATCAATTTTCTCTCAGAGAGACATACCTATTTTTCCGGAGCTTTTTATTCCGGGAGGAAACAATATAGTGTATAAAAGATTTGTCTTTGAAGCCTCAAAGATTAAGTCCCTCAAGGAAAAGGTAAGAAATTCTTTAAATTTTTCTCCGACTCGCGTACAAGTTGTAAGTGCATTGATTTACAAGCGCGCGGTTACAACAAAGGGATTAAATTTCAAGATTGCGCCGTTCACTACAGTTGTAGACGTTCGCAGAAGAATGGTTCCTCCATTGTCAGAAAACTATGTTGGAAACATAGTTTGGTTTGCATCTATGTGTCCAGATAAAGAGAAAATGGAGCTGGATGAATTGGTAAGCAAGATAAAACAAGCATTATCTGAATTTTGCGAGGTTTATCCGAAAAAATTCGAAGGGAAAGAAGAGGAGGATTTGTCATTTATTTCAGGGTGTTTGGAACATCTTAATGATGGTTATTATGAGAATCATAATATGTATACATTTAGTAGTTGGTGTGGATTTCCAGTATATGATGTAGATTTTGGGTGGGGAAAACCAACATGGGTAACCACTTTTGGTTGTTTGATGAAGAATGTAATATTTATGATGGATGCTAGAGATGGAGAAGGGATTGAAGTGTTTGTGAGCATGAAAAAGAATGATATGGATAAGTTTGAAAATGATGTTGAGATTCTTCAATATGCATCTCTTAATCCAAGCAATGTTTGA 1380 0.3601 MHTCLLNDSETKKIRTRETIVNQLIMEIEILSRETIKPSSPTPSDLRIYPLSFIDNAFYRKYVPVIFFYNTNEVSNQTSKVSQLRNSLSHVLSKYYHFAGRLKDKTTIECNDQGVSFFITKIQNNLSEIVQNPTEESVNSLFPDELQWKVMDWSGSLFVIQVHCFACGGIAISILMTHKVGDGTTLFKFLNDWAIINQKLEQEDLSILLSPLSLQEGGASIFSQRDIPIFPELFIPGGNNIVYKRFVFEASKIKSLKEKVRNSLNFSPTRVQVVSALIYKRAVTTKGLNFKIAPFTTVVDVRRRMVPPLSENYVGNIVWFASMCPDKEKMELDELVSKIKQALSEFCEVYPKKFEGKEEEDLSFISGCLEHLNDGYYENHNMYTFSSWCGFPVYDVDFGWGKPTWVTTFGCLMKNVIFMMDARDGEGIEVFVSMKKNDMDKFENDVEILQYASLNPSNV 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05622 459 Gene3D - 238 453 IPR023213 -
Vivi5g05622 459 Gene3D - 24 217 IPR023213 -
Vivi5g05622 459 Pfam Transferase family 26 447 - -
Vivi5g05622 459 PANTHER F21J9.9 29 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05622 Vivi-Chr5 159499817 159501728 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05622 26 443 Monolignol Biosynthesis Gene Families AT5G48930 23.956 4.15e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05622 - - vvo:131607968 931.784