Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05607 ATGCAGTTTGATTCAGATTCAGACTCCGACGGATCTCACGTCTCCACAACCCCTCCAAGACAACCAAATCCACCACCACCACCACCAAAACCACCACTTCCAGTTTTCACCAAAAAATCCAAATCCAAAACTAAAACCAAAACCAAACCCTCAAAACCCCCTTCAAAACCTCCCGAAACTCCCATCCAACAACTAGACAATTTCCCACTCCCTTCCACCACTTCCCTCCCTTTCCAAATCCGACTCAGAACTTCCGACGGACCTTCTACTTCATCTTCATCCATGGAAACCCTCCCTGCTGGCTTCTTCTCCAAATCAATTTCATTCTCGAGAATTCGTAAACCCTTACTCAATCTAGAAGCTTCTGAAGCCGAACCAGTTAAATCCTCCATGCAATCTGCGGAGAAACCTCCCAATTTGATTGGTGCTAAGAAACCTCCCAATTTGAGTAGTGCCAAGAAACTTCCTAATTTGATTGGTGCTAAGAGACCTCCTAATTTGATTGGTGCTAGTTTGCCAACGCCGGTGGTGAAGGTACTACGAGGTTCCGGAGAAGGAAATTTTGTGAAATTGAATTTGAGTGGTAAGAGGAAAAAGTTTTTGAACAAAGGGTGGAAGAAAAATGGAAAATTTGGGAGTGGTAAAAGGTATAGAAGGAATAGTTATAGTAATAGTAGTAGTAGAAGTAAGCGTAAGAAATTGGAAGGTGAAGGGGAGGATAATGAGGAGGATGCTTTGGGATTAGAGGATGCAAAGCAACAAGAGAAGCAAAAGGGTTGGGAAAATGAGTGCAAAGTGTTGGAGGAGGCTGTGTTAGCTGCAAGAGGTGAAGCTTCTGATGAGAATTTAGTGAGGCTGTTGAAATTGATTCATGGGTATGATTCTTTTCGAGAGGGGCAGCTTGAGGCTATCAAGAATGTTCTTGCCGGGAAGTCGACGATGCTTATTTTGCCCACGGGTGCAGGGAAGTCGTTGTGTTATCAGTTGTGTGCGTTGATTTTGCCTGGGATTACGCTTGTTGTTAGTCCGTTGCTAGCTTTGATGATTGATCAGCTTAAGCAATTGCCTCCACTCATTTCGGGTGCTCTTCTAAGCAGTGCACAAACGCTTGAAGAATCATCTGAAACGCTCAGCCAGCTTCGGCAAGGCACAATAAAGGTGCTTTTTGTTTCACCCGAGCGGTTTTTGAATAAGGAGTTTCTGTCTGCTATCTCTGCTGGGTCAGCCGTCTCACTCGTTGTTATTGACGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCACTACTTCATAGAAGTCTTAATGTAGGTTCTGTTCTCGCAATGACAGCAACTGCTACAACCACAACTTTAGATTCCATCATGTCTGCCCTAGATATTCCATTCTCGAATCTTATTCAGAATGCGCACTTAAGGGACAATTTGCGTTTATCTGTGTCTTTAATAAAAAATAGAATGAAAGACCTACTGGTTCTGATCAAGTCTCCTCCTTTCACGGAAGTTAAAAGCATCATAGTGTACTGCAAATTTCAGTCTGAAACTGATCAAATTAGCAGATACTTGAATGATAACAATATCTCGGCAAAGAGTTATCATAGTGGTATTTTTGCAAAGGAACGTGGCTACGTACAGGAGTTGTTTGGTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGTATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCTGGAAGTCTGGAAGAGTATGTACAGGAGATAGGACGTGCTGGGAGGGATGGGAGGTTGTCCTATTGTCACCTATTTTATGATGATGAAATGTACTTCAAACTCCGTAGTCTAATGTACAGTGAAGGAGTAGATGAATATTCAGTCAATAAATTTCTGTCTGAAGTGTTTCCTGCTGACAAAAGCTCCTGTGGGAAAGTCTGTTCGTTAATCAAAGAATCTGCTTCACGCAGATTTGATATGAAGGAAGAGGTGATTCTCACAGTTTTGACACGCTTAGAGCTGGGTGATGTGCAGTACTTACACTTACTTCCACAGACAAATGTTACTTGTGTTCTGAATTTTTATAAGACTCCGGCTGTGTCCCTTGCCCAAAAGGTTTCTGCTATTGCGGTGATTCTGAAAAGATCTGAAAATAAGCACGGACAATATACTTTTGATATTCCAACTGTGGCAAATGACATGGGGGTCACACCAGTTGAACTAACAAATCAGTTGTATGACCTAAAGTTGAAGGGAGAAATAACTTATGAAATGAAAGACATGGCCTACTGTTATAGGATTCTTGAAGTCCCAACAGACTTTTTGTCTCTATCGGCAGATATTACCCAATGGTTATCTGAAGTTGAAAGTTGTAAGGTGCGGAAAATGGATGCAATGTTTAATGCTGCATATTTTGCAGTCAATCTATGTGATAAGATGAACGGTTGCAGTAGTGCCGATCACACTTCATGCTTGCAAAGGATAATATTGAACTACTTTGCTGGAGTTGATAATATTGATTTCTGCAAGAAAATCGATCAAAGCAGTCCTTTCCTGCGGGCAGATATTAAGGTCTTTCTACAGAGCAATTCACATGCTCGCTTTACACCAAGAGCTGTTGCGAGGGTAATGCACGGAATTGCAAGCCCAGCCTACCCTAATACAATATGGGGTAAAACCCATTTCTGGGGAAGGTATACCAAGATAGACTTTAAAGTGGTGATGGAAGCAGCAAAGGAAGAACTTAAAAAATTGGTCGGGAAGGATACTCTCTAG 2802 0.4183 MQFDSDSDSDGSHVSTTPPRQPNPPPPPPKPPLPVFTKKSKSKTKTKTKPSKPPSKPPETPIQQLDNFPLPSTTSLPFQIRLRTSDGPSTSSSSMETLPAGFFSKSISFSRIRKPLLNLEASEAEPVKSSMQSAEKPPNLIGAKKPPNLSSAKKLPNLIGAKRPPNLIGASLPTPVVKVLRGSGEGNFVKLNLSGKRKKFLNKGWKKNGKFGSGKRYRRNSYSNSSSRSKRKKLEGEGEDNEEDALGLEDAKQQEKQKGWENECKVLEEAVLAARGEASDENLVRLLKLIHGYDSFREGQLEAIKNVLAGKSTMLILPTGAGKSLCYQLCALILPGITLVVSPLLALMIDQLKQLPPLISGALLSSAQTLEESSETLSQLRQGTIKVLFVSPERFLNKEFLSAISAGSAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHRSLNVGSVLAMTATATTTTLDSIMSALDIPFSNLIQNAHLRDNLRLSVSLIKNRMKDLLVLIKSPPFTEVKSIIVYCKFQSETDQISRYLNDNNISAKSYHSGIFAKERGYVQELFGSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPGSLEEYVQEIGRAGRDGRLSYCHLFYDDEMYFKLRSLMYSEGVDEYSVNKFLSEVFPADKSSCGKVCSLIKESASRRFDMKEEVILTVLTRLELGDVQYLHLLPQTNVTCVLNFYKTPAVSLAQKVSAIAVILKRSENKHGQYTFDIPTVANDMGVTPVELTNQLYDLKLKGEITYEMKDMAYCYRILEVPTDFLSLSADITQWLSEVESCKVRKMDAMFNAAYFAVNLCDKMNGCSSADHTSCLQRIILNYFAGVDNIDFCKKIDQSSPFLRADIKVFLQSNSHARFTPRAVARVMHGIASPAYPNTIWGKTHFWGRYTKIDFKVVMEAAKEELKKLVGKDTL 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05607 933 MobiDBLite consensus disorder prediction 123 150 - -
Vivi5g05607 933 MobiDBLite consensus disorder prediction 18 35 - -
Vivi5g05607 933 MobiDBLite consensus disorder prediction 1 17 - -
Vivi5g05607 933 MobiDBLite consensus disorder prediction 61 97 - -
Vivi5g05607 933 FunFam ATP-dependent DNA helicase Q4 264 474 - -
Vivi5g05607 933 MobiDBLite consensus disorder prediction 204 256 - -
Vivi5g05607 933 NCBIfam RecQ family ATP-dependent DNA helicase 286 642 IPR004589 GO:0004386|GO:0006310
Vivi5g05607 933 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 411 420 IPR002464 -
Vivi5g05607 933 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 618 IPR027417 -
Vivi5g05607 933 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 495 645 IPR001650 -
Vivi5g05607 933 Pfam Helicase conserved C-terminal domain 511 605 IPR001650 -
Vivi5g05607 933 CDD SF2_C_RecQ 482 615 - -
Vivi5g05607 933 CDD DEXHc_RecQ4-like 284 481 - -
Vivi5g05607 933 PANTHER DNA HELICASE RECQ FAMILY MEMBER 273 799 - -
Vivi5g05607 933 Pfam DEAD/DEAH box helicase 299 460 IPR011545 GO:0003676|GO:0005524
Vivi5g05607 933 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 304 474 IPR014001 -
Vivi5g05607 933 SMART helicmild6 525 606 IPR001650 -
Vivi5g05607 933 MobiDBLite consensus disorder prediction 1 97 - -
Vivi5g05607 933 FunFam ATP-dependent DNA helicase Q-like 5 482 673 - -
Vivi5g05607 933 SMART ultradead3 292 490 IPR014001 -
Vivi5g05607 933 Gene3D - 482 663 IPR027417 -
Vivi5g05607 933 Gene3D - 268 472 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05607 Vivi-Chr5 159151045 159158897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05607 511 638 Eukaryotic Initiation Factors Gene Family AT3G19760 30.000 8.11e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05607 K10730 - gmx:100811214 1206.05