Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05605 ATGGCTGCTGGTAGACATGGCCGTTATCATGAAAACGAGTTTAAGGATCATGAATCCAATTTGGAAGTTAATAGGCGTGGGTTTTCGAATTCAAAAGAGTATGATCGGGTTAGGAATGGTGGTCATGATGATGTTAGGAGTGGGAGTAGAGATTCCAGAGATAAGATTAGGATGAAGCAGAAGGATGGTAGGGAGAGAGAAGCTGTTGTTAATGGAAATTACGGGTCAGCTTCCAGCCGGAGTGGCTCCAGCAGCAGTGGCAGCCTTGGTCCTCGTCGGTGTGGTTTTTCTGCCAAGATAATTGATAGAGAGCCTGGCGAGCTTTCCAGTGAGAGCGGGTCTGATGGTGCTACTGAATCTGAGGTTAGGGTGAAAGATTGTGATGTTGCTGTGTTTGAAGGAAAAAGGTCACGGTCACCTCCGCCCCAGGAGAGGAAAAGGAAATTTTCACCCATTGTGTGGGATCAAGATGACAAGGAAGTGAAGGGTTCTTCCAAAGTTAGGGTTTCCACTACAACGGTGACTGCTCTCCCTCCTCTGCCTCAGCTGTCAAAATCGGCTGTTATGTCTCCAAATACTTCTTCTGTTGAAGTTCAAATACGTTCTGTCAGGAACAGAGAAACTGGCGATCTTGATCTTGAGTTGCCTGCAGAAACTCAGGTTACTGTTCCTTCTCCTTCCAGATTGCAGTCCTTGTCACCAAAAGAGATTTTGGGTAATGATCAGGAAGCTGAGCTGCCTGAAGGTGAAGATTATGTTCCCACTCGTAATATATCATCTTCAAGATGGGCAGCAGGAGACAACTCTCCTGTTGACGAGGGTGAAATTCTCTATGATGAGGAAATGCCTAAAAGGAAGAGGAGGTTAACTCCTGAGTTGTTGGAGACTAGAGTGAGAAATAAGTTATTGAGCCCCAATGATTCTAAAATAGGTAGTTTTGAAGGAGCTAGGGCCAAATCATCTGATTCGGAAGAAAGAAGTGTTATCCATGGGAGAACGTCTAGTGGCGATGGACATCCTAGTATTGAATCAGAAAAGGATGACTATATGGACATTGATGTTCGAGGTACGAAAAGTGACACAAGTATCAGTCACTCAGAGACAGAATCTGAAGACGACGATGATAGGCAGGAGACTCCAGAACCTCCAGCTCAACCTCAAAGAACTGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAGTTTGAGAGACTTAACAAGATTGATGAAGGAACATACGGTGTTGTATATAGAGCTAAAGATAAGAAGACTGGGGAAGTTGTAGCTTTAAAGAAGGTAAAGATGGAGAAGGAAAAAGAAGGTTTCCCACTGACTTCTCTTAGGGAAATAAATGTTCTTCTCTCTTTTCACCATCCATACATAGTTGATGTCAAGGAAGTAGTTGTTGGAAGTAGCCTTGATAGTATTTTCATGGTTATGGAATATATGGAGCACGATCTCAAAGGATTAATGGAGTCAATGAAGCAGCCGTTTAGCCAAAGTGAAGTGAAGTGCTTAATGATCCAACTTTTAGAAGGTGTGAAGTATCTGCATGACAACTGGGTACTTCATAGGGATTTGAAGACTTCAAACCTGCTTTTAAATAACAGAGGTGAGCTAAAAATTTGTGATTTTGGGTTGGCTCGTCAATATGGGAGTCCTTTGAAACCATATACTCACCTGGTGGTTACTCTTTGGTACAGGGCACCCGAACTTCTTCTTGGGGCAAGACAGTACTCAACAGCTATTGATATGTGGTCTCTTGGTTGTATAATGGCGGAACTATTGTCCAAGGAACCATTGTTCAATGGAAAAACAGAATTTGATCAACTTGACAAGATTTTCAGGATACTTGGCACTCCAAATGAAACAATTTGGCCAGGCTTCTCAAAATTGCCCGGAGTCAAGGTCAATTTTGTCAAGCACCAGCTTCCAACTTTGGGTGGTTTTGGTATAATCTTCTGCGTAAAAAGTTTCCTGCCACATCATTCACTGGATCTCCAGTTCTTTCTGATTCTGGATTTGATTTGTTGA 2034 0.4287 MAAGRHGRYHENEFKDHESNLEVNRRGFSNSKEYDRVRNGGHDDVRSGSRDSRDKIRMKQKDGREREAVVNGNYGSASSRSGSSSSGSLGPRRCGFSAKIIDREPGELSSESGSDGATESEVRVKDCDVAVFEGKRSRSPPPQERKRKFSPIVWDQDDKEVKGSSKVRVSTTTVTALPPLPQLSKSAVMSPNTSSVEVQIRSVRNRETGDLDLELPAETQVTVPSPSRLQSLSPKEILGNDQEAELPEGEDYVPTRNISSSRWAAGDNSPVDEGEILYDEEMPKRKRRLTPELLETRVRNKLLSPNDSKIGSFEGARAKSSDSEERSVIHGRTSSGDGHPSIESEKDDYMDIDVRGTKSDTSISHSETESEDDDDRQETPEPPAQPQRTVNMLQGCRSVDEFERLNKIDEGTYGVVYRAKDKKTGEVVALKKVKMEKEKEGFPLTSLREINVLLSFHHPYIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMESMKQPFSQSEVKCLMIQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGARQYSTAIDMWSLGCIMAELLSKEPLFNGKTEFDQLDKIFRILGTPNETIWPGFSKLPGVKVNFVKHQLPTLGGFGIIFCVKSFLPHHSLDLQFFLILDLIC 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05605 677 CDD STKc_CDC2L1 396 643 IPR045267 GO:0004674|GO:0005524|GO:0006468
Vivi5g05605 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Vivi5g05605 677 Gene3D Transferase(Phosphotransferase) domain 1 485 654 - -
Vivi5g05605 677 MobiDBLite consensus disorder prediction 1 68 - -
Vivi5g05605 677 MobiDBLite consensus disorder prediction 318 332 - -
Vivi5g05605 677 MobiDBLite consensus disorder prediction 72 91 - -
Vivi5g05605 677 Gene3D Phosphorylase Kinase; domain 1 386 484 - -
Vivi5g05605 677 FunFam Cyclin-dependent kinase G-2 485 674 - -
Vivi5g05605 677 MobiDBLite consensus disorder prediction 216 283 - -
Vivi5g05605 677 MobiDBLite consensus disorder prediction 339 370 - -
Vivi5g05605 677 MobiDBLite consensus disorder prediction 1 169 - -
Vivi5g05605 677 SMART serkin_6 402 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05605 677 FunFam cyclin-dependent kinase G-2 isoform X1 387 484 - -
Vivi5g05605 677 SUPERFAMILY Protein kinase-like (PK-like) 394 642 IPR011009 -
Vivi5g05605 677 ProSiteProfiles Protein kinase domain profile. 402 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05605 677 PANTHER CELL DIVISION PROTEIN KINASE 400 634 - -
Vivi5g05605 677 MobiDBLite consensus disorder prediction 118 165 - -
Vivi5g05605 677 Pfam Protein kinase domain 402 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05605 677 MobiDBLite consensus disorder prediction 304 388 - -
Vivi5g05605 677 MobiDBLite consensus disorder prediction 220 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05605 Vivi-Chr5 159131604 159135100 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05605 393 633 Core Cell Cycle Gene Families AT5G10270 51.953 3.18e-85 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Vivi5g05605 Pkinase 1.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05605 K08818 - gmx:100792524 957.592