Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05604 ATGGCTGCTGGTAGACATGGCCGTTATCATGAAAACGAGTTTAAGGATCATGAATCCAATTTGGAAGTTAATAGGCGTGGGTTTTCGAATTCAAAAGAGTATGATCGGGTTAGGAATGGTGGTCATGATGATGTTAGGAGTGGGAGTAGAGATTCCAGAGATAAGATTAGGATGAAGCAGAAGGATGGTAGGGAGAGAGAAGCTGTTGTTAATGGAAATTACGGGTCAGCTTCCAGCCGGAGTGGCTCCAGCAGCAGTGGCAGCCTTGGTCCTCGTCGGTGTGGTTTTTCTGCCAAGATAATTGATAGAGAGCCTGGCGAGCTTTCCAGTGAGAGCGGGTCTGATGGTGCTACTGAATCTGAGGTTAGGGTGAAAGATTGTGATGTTGCTGTGTTTGAAGGAAAAAGGTCACGGTCACCTCCGCCCCAGGAGAGGAAAAGGAAATTTTCACCCATTGTGTGGGATCAAGATGACAAGGAAGTGAAGGGTTCTTCCAAAGTTAGGGTTTCCACTACAACGGTGACTGCTCTCCCTCCTCTGCCTCAGCTGTCAAAATCGGCTGTTATGTCTCCAAATACTTCTTCTGTTGAAGTTCAAATACGTTCTGTCAGGAACAGAGAAACTGGCGATCTTGATCTTGAGTTGCCTGCAGAAACTCAGGTTACTGTTCCTTCTCCTTCCAGATTGCAGTCCTTGTCACCAAAAGAGATTTTGGGTAATGATCAGGAAGCTGAGCTGCCTGAAGGTGAAGATTATGTTCCCACTCGTAATATATCATCTTCAAGATGGGCAGCAGGAGACAACTCTCCTGTTGACGAGGGTGAAATTCTCTATGATGAGGAAATGCCTAAAAGGAAGAGGAGGTTAACTCCTGAGTTGTTGGAGACTAGAGTGAGAAATAAGTTATTGAGCCCCAATGATTCTAAAATAGGTAGTTTTGAAGGAGCTAGGGCCAAATCATCTGATTCGGAAGAAAGAAGTGTTATCCATGGGAGAACGTCTAGTGGCGATGGACATCCTAGTATTGAATCAGAAAAGGATGACTATATGGACATTGATGTTCGAGGTACGAAAAGTGACACAAGTATCAGTCACTCAGAGACAGAATCTGAAGACGACGATGATAGGCAGGAGACTCCAGAACCTCCAGCTCAACCTCAAAGAACTGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAGTTTGAGAGACTTAACAAGATTGATGAAGGAACATACGGTGTTGTATATAGAGCTAAAGATAAGAAGACTGGGGAAGTTGTAGCTTTAAAGAAGGTAAAGATGGAGAAGGAAAAAGAAGGTTTCCCACTGACTTCTCTTAGGGAAATAAATGTTCTTCTCTCTTTTCACCATCCATACATAGTTGATGTCAAGGAAGTAGTTGTTGGAAGTAGCCTTGATAGTATTTTCATGGTTATGGAATATATGGAGCACGATCTCAAAGGATTAATGGAGTCAATGAAGCAGCCGTTTAGCCAAAGTGAAGTGAAGTGCTTAATGATCCAACTTTTAGAAGGTGTGAAGTATCTGCATGACAACTGGGTACTTCATAGGGATTTGAAGACTTCAAACCTGCTTTTAAATAACAGAGGTGAGCTAAAAATTTGTGATTTTGGGTTGGCTCGTCAATATGGGAGTCCTTTGAAACCATATACTCACCTGGTGGTTACTCTTTGGTACAGGGCACCCGAACTTCTTCTTGGGGCAAGACAGTACTCAACAGCTATTGATATGTGGTCTCTTGGTTGTATAATGGCGGAACTATTGTCCAAGGAACCATTGTTCAATGGAAAAACAGAATTTGATCAACTTGACAAGATTTTCAGGATACTTGGCACTCCAAATGAAACAATTTGGCCAGGCTTCTCAAAATTGCCCGGAGTCAAGGTCAATTTTGTCAAGCACCAGTATAATCTTCTGCGTAAAAAGTTTCCTGCCACATCATTCACTGGATCTCCAGTTCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTTCTAACTTATGACCCTGAAAAGAGGATCACAGCTGATGCCGCTCTCAATCATGAATGGTTTCGTGAAGTTCCTCTTCCCAAGAGCAAAGAATTCATGCCTACATTTCCCGCTCAACATGCTCAGGACAGGCGGCTGCGTAGAATGTACAAGAGTCCAGATCCTTTAGAGGAGCAGCGACGGAAAGAGTTGCAGCAGGGTGACTTGGGCACTGGCGGAGTTTTTGGTTAA 2247 0.4344 MAAGRHGRYHENEFKDHESNLEVNRRGFSNSKEYDRVRNGGHDDVRSGSRDSRDKIRMKQKDGREREAVVNGNYGSASSRSGSSSSGSLGPRRCGFSAKIIDREPGELSSESGSDGATESEVRVKDCDVAVFEGKRSRSPPPQERKRKFSPIVWDQDDKEVKGSSKVRVSTTTVTALPPLPQLSKSAVMSPNTSSVEVQIRSVRNRETGDLDLELPAETQVTVPSPSRLQSLSPKEILGNDQEAELPEGEDYVPTRNISSSRWAAGDNSPVDEGEILYDEEMPKRKRRLTPELLETRVRNKLLSPNDSKIGSFEGARAKSSDSEERSVIHGRTSSGDGHPSIESEKDDYMDIDVRGTKSDTSISHSETESEDDDDRQETPEPPAQPQRTVNMLQGCRSVDEFERLNKIDEGTYGVVYRAKDKKTGEVVALKKVKMEKEKEGFPLTSLREINVLLSFHHPYIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMESMKQPFSQSEVKCLMIQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGARQYSTAIDMWSLGCIMAELLSKEPLFNGKTEFDQLDKIFRILGTPNETIWPGFSKLPGVKVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITADAALNHEWFREVPLPKSKEFMPTFPAQHAQDRRLRRMYKSPDPLEEQRRKELQQGDLGTGGVFG 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05604 748 CDD STKc_CDC2L1 396 693 IPR045267 GO:0004674|GO:0005524|GO:0006468
Vivi5g05604 748 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Vivi5g05604 748 Pfam Protein kinase domain 402 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05604 748 MobiDBLite consensus disorder prediction 1 68 - -
Vivi5g05604 748 MobiDBLite consensus disorder prediction 318 332 - -
Vivi5g05604 748 MobiDBLite consensus disorder prediction 72 91 - -
Vivi5g05604 748 SUPERFAMILY Protein kinase-like (PK-like) 394 699 IPR011009 -
Vivi5g05604 748 MobiDBLite consensus disorder prediction 339 370 - -
Vivi5g05604 748 MobiDBLite consensus disorder prediction 1 169 - -
Vivi5g05604 748 FunFam cyclin-dependent kinase G-2 isoform X1 387 484 - -
Vivi5g05604 748 FunFam Cyclin-dependent kinase G-2 485 724 - -
Vivi5g05604 748 SMART serkin_6 402 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05604 748 ProSiteProfiles Protein kinase domain profile. 402 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05604 748 MobiDBLite consensus disorder prediction 118 165 - -
Vivi5g05604 748 MobiDBLite consensus disorder prediction 724 748 - -
Vivi5g05604 748 PANTHER CELL DIVISION PROTEIN KINASE 400 699 - -
Vivi5g05604 748 MobiDBLite consensus disorder prediction 304 388 - -
Vivi5g05604 748 Gene3D Transferase(Phosphotransferase) domain 1 485 726 - -
Vivi5g05604 748 MobiDBLite consensus disorder prediction 220 237 - -
Vivi5g05604 748 Gene3D Phosphorylase Kinase; domain 1 386 484 - -
Vivi5g05604 748 MobiDBLite consensus disorder prediction 220 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05604 Vivi-Chr5 159127996 159135099 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05604 393 741 Core Cell Cycle Gene Families AT5G10270 44.932 2.23e-94 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Vivi5g05604 Pkinase 1.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05604 K08818 - gmx:100792524 1163.67