Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05598 ATGATTGGCTATCTGTTTCTCAGGGCACCCAAACTTCTTCTTGGGGCAAGACAGTACTCGACAGCTATTGATATGTGGTCTCTTGGTTGTATAATGGCGGAACTATTGTCCAAGGAACCACTGTTCAATGAAAAAACGGAATTTGATCAACTTGACAAGATTTTCAGGATACTTGGCACTCCAAATGAAACAATTTGGCCAGGCTTCTCAAAATTGCCCGGAGTGAAGGTCAATTTTGTCAAGCACCAGTATAATCTTCTGCATAAAAAGTTTCCTGCCACATCATTCACTGGATCTCCAGTTCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTTCTAACTTATGACCCTGAAAAGAGGATCACAGCTGATGCCGCTCTCAATCATGAATGGTTTTGTGAAGTTCCTCTTCCCAAGAGCAAAGAATTCATGCCTACATTTCCCGCTCAACATGCTCAGGACAGAGGTGGTTGGTGTGAAGTGCAAGAGGGCCTTCTATGCAATTCATTGGAGAAAATGACGGGGGATTTATTATGCGTGAAAGTTAAAAGGAAGCAAAGAAGTTCTCGTATAATCATGTGTATTCGCTGTTTGAAGATTGAAGTTTTGAGCAAGGATAAGAATTCTTTTATGACATTTGTCGGTAAATATCACTGCAGTATTGAAGCAAGCAGGTTGAGGAGGATATCACATATCAGGATATCCTAA 711 0.4065 MIGYLFLRAPKLLLGARQYSTAIDMWSLGCIMAELLSKEPLFNEKTEFDQLDKIFRILGTPNETIWPGFSKLPGVKVNFVKHQYNLLHKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITADAALNHEWFCEVPLPKSKEFMPTFPAQHAQDRGGWCEVQEGLLCNSLEKMTGDLLCVKVKRKQRSSRIIMCIRCLKIEVLSKDKNSFMTFVGKYHCSIEASRLRRISHIRIS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05598 236 SMART serkin_6 1 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05598 236 SUPERFAMILY Protein kinase-like (PK-like) 7 139 IPR011009 -
Vivi5g05598 236 PANTHER CELL DIVISION PROTEIN KINASE 3 139 - -
Vivi5g05598 236 FunFam - 9 133 - -
Vivi5g05598 236 ProSiteProfiles Protein kinase domain profile. 1 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05598 236 Gene3D Transferase(Phosphotransferase) domain 1 5 133 - -
Vivi5g05598 236 Pfam Protein kinase domain 8 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05598 Vivi-Chr5 159097692 159106889 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05598 5 137 Core Cell Cycle Gene Families AT1G20930 47.368 2.91e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Vivi5g05598 Pkinase 7.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05598 K08818 - gmx:100792524 298.13