Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05586 ATGTGCAAGACTCTTTCTATAGTATATTGCAAAGTATTGTCAATATTTCCCTCTTTAGAAGCAGCTAGGCCTAGGAGTAAAACCGGAATTCAGGCATTATGTTCATTGCATGTTGCCTTGGAGAAAGCCAAGAATGTTCTTCATCATTGCTCAGTGTGCAGTAAACTTTACCTGGCTGTAACTGGGGACTCCGTTCTCCTAAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAGGCGGGTGGAAGATATTGTTCCACAATCCATTGGATATCAGGTTCAGGAGATTGTGAATGAATTTGCAAGTGTGGAATTTGCACTTGACCCCTTAGAGAAGCAAGTTGGTGATGATCTAATTGCATTGCTCCAGCAGGGCAAGAAGTTTGACGAAGATAGTGAAAGTTATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATCACATCTTCAAGAGCAGCTCTTGCCGAAAGAAGAGCTCTCAAGAAACTTATAGACAAGGCTCGGGCTGAGGAGGACAAACGAAAGGAATCAATTGTTGCATATCTTTTGCATCTTATGAGGAAGTACTCCAAGTTATTCAGAAATGAGTTTTCAGACGATACTGATTCTCAGGGTTCTGGTCCTTGTTCTCCCACTGTTCAGGGATCTAATGAGGACGGTGTTCCCGTTTCTCATAATCAGGCTTTTGGCAGACAGCTTTCAAAACTTAGTTCCTTTAGTTTCACGCCAAATAATACTATGGAGCCGGGGCAGATGGCTCTACCACCTGAGGAGTTAAGGTGTCCAATATCTCTGCAACTTATGTATGATCCAGTTATTATTGCTTCGGGGCAAACATATGAAAGGGTTTGCATAGAGAAATGGTTCGGTGATGGGCACAACAACTGCCCAAAGACCCAACAGAATCTTCCACATCTTTGCTTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGCGAACAAAATGGAATTCCTATTCCCGAAGGCCCTCCTGAGTCTCTTGATCTTAACTACTGGAGATTGGTAATATCAGAGTCTGAGTCTGCAAATTCAAGATCTGTAAATAGTGTCAGCTCTTGCAAACTGAAGGGTGTCAGAGTGGTTCCTTTAGAAGAGAGTTGTAACTCAAAGGAATATGGGGAAAATGAAGCTGAAAGTGTATCTGCACAAGAGGAAGACACCGAGCAGTATGTTAATTTTCTGAAAGTCTTGACTGAGGAGAACAATTGGAAGGGGAAATATGAAGTGGTAGATAAGTTAAGGCTGTTGCTGAGGGATGATGAAGAAGCTAGGATTCTTATGGGGGCTAATGGGTTTGTTGAAGCACTTGTTCTGTTTTTACAATCGGCTTTACATGAAAGGAATTTGATGGCTCAGGAAAGCGGAGCAATGGCTCTTTTCAACATAGCTGTGAATAATGACAGAAATAAGGAGATTATGTTATCAGCTGGAGTTTTATCTTTGTTGGAGGAGATGATTTCTAGCACTAGTTCTTATGGTTGTGCAACTGCTCTATATCTGAATCTCTCTTGCCTTGAAGAAGCCAAACCTATGATTGGCATGAGCCAGGCTGTACGGTTCCTAACCCAGCTCCTTCAATCTGACTATGACATTCAATACAAGCATGATTCTCTCCATGCTCTCTATAATCTTTCTACTTTGCCCTCCAATATTCCATACTTACTTTCATCTGGCATTGTTAATGGCCTACAATCCCTTCTTGTAGACCAGGGTGATGATTGTACATGGACAGAAAAATGCATAGCTATTTTGATAAATTTAGCCACTTCTCAAGTTGGCAGGGAGGAAATGGTATCAACTCCTGGACTAATTAGTGCACTGGCTTCAATATTGGACACTGATGAGCTCGAAGTGCAGGAGCAAGCTGTCTCTTGCCTCCTAATTTTGTGCAATAGAAGTGAGCAGTGTTCTGATATGGTCCTGCAAGAAGGAGTTATACCTGCACTGGTATCAATATCAGTGAATGGGACCTCAAGAGGACAAGAAAAAGCTCAGAAACTCCTGATGCTGTTCCGACAGCAGCGACGAGATGAATCACCTGTTGAGGCTCACGAGTGTCCGCCTGAAACTAGTGATTTGTCTGTGCCACCTGCTGAAATGAAACCTTTATGTAAGTCGATGACTAGAAGAAAGACTGGGAAAGGTTTTGGCTTTTTCTGGAGAAGCAAGAGCTATTCAGTATACCAGTGTTGA 2235 0.4224 MCKTLSIVYCKVLSIFPSLEAARPRSKTGIQALCSLHVALEKAKNVLHHCSVCSKLYLAVTGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGYQVQEIVNEFASVEFALDPLEKQVGDDLIALLQQGKKFDEDSESYELESFHQAATRLGITSSRAALAERRALKKLIDKARAEEDKRKESIVAYLLHLMRKYSKLFRNEFSDDTDSQGSGPCSPTVQGSNEDGVPVSHNQAFGRQLSKLSSFSFTPNNTMEPGQMALPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFGDGHNNCPKTQQNLPHLCLTPNYCVKGLVASWCEQNGIPIPEGPPESLDLNYWRLVISESESANSRSVNSVSSCKLKGVRVVPLEESCNSKEYGENEAESVSAQEEDTEQYVNFLKVLTEENNWKGKYEVVDKLRLLLRDDEEARILMGANGFVEALVLFLQSALHERNLMAQESGAMALFNIAVNNDRNKEIMLSAGVLSLLEEMISSTSSYGCATALYLNLSCLEEAKPMIGMSQAVRFLTQLLQSDYDIQYKHDSLHALYNLSTLPSNIPYLLSSGIVNGLQSLLVDQGDDCTWTEKCIAILINLATSQVGREEMVSTPGLISALASILDTDELEVQEQAVSCLLILCNRSEQCSDMVLQEGVIPALVSISVNGTSRGQEKAQKLLMLFRQQRRDESPVEAHECPPETSDLSVPPAEMKPLCKSMTRRKTGKGFGFFWRSKSYSVYQC 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05586 744 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Vivi5g05586 744 MobiDBLite consensus disorder prediction 693 712 - -
Vivi5g05586 744 FunFam RING-type E3 ubiquitin transferase 258 332 - -
Vivi5g05586 744 CDD RING-Ubox_PUB 260 312 IPR045210 -
Vivi5g05586 744 Gene3D - 379 695 IPR011989 -
Vivi5g05586 744 MobiDBLite consensus disorder prediction 203 228 - -
Vivi5g05586 744 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 332 IPR013083 -
Vivi5g05586 744 SMART arm_5 603 645 IPR000225 GO:0005515
Vivi5g05586 744 SMART arm_5 519 560 IPR000225 GO:0005515
Vivi5g05586 744 SMART arm_5 479 518 IPR000225 GO:0005515
Vivi5g05586 744 SMART arm_5 434 478 IPR000225 GO:0005515
Vivi5g05586 744 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Vivi5g05586 744 Pfam U-box domain 260 329 IPR003613 GO:0004842|GO:0016567
Vivi5g05586 744 SUPERFAMILY ARM repeat 407 687 IPR016024 -
Vivi5g05586 744 MobiDBLite consensus disorder prediction 201 228 - -
Vivi5g05586 744 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 445 491 IPR000225 GO:0005515
Vivi5g05586 744 PANTHER U BOX DOMAIN-CONTAINING 4 689 - -
Vivi5g05586 744 Coils Coil 154 174 - -
Vivi5g05586 744 SUPERFAMILY RING/U-box 257 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05586 Vivi-Chr5 159069461 159073775 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05586 1 743 U-box Gene Family AT1G24330 65.040 0.0 976
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05586 - - gmx:100794099 1206.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05586 5 159069461 159073775 Vivi5g05586 5 159069461 159073775 ECH
Vivi3g03358 3 56612316 56616717 Vivi5g05586 5 159069461 159073775 PCT