Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05585 ATGATGGATGTTGCCGCTGAGGTTGAAGAAAATCTATTTGCTGTTAGTGATGCGAAGTTACATGGACAAATGTGCAAGACTCTTTCTATAGTATATTGCAAAGTATTGTCAATATTTCCCTCTTTAGAAGCAGCTAGGCCTAGGAGTAAAACCGGAATTCAGGCATTATGTTCATTGCATGTTGCCTTGGAGAAAGCCAAGAATGTTCTTCATCATTGCTCAGTGTGCAGTAAACTTTACCTGGCTGTAACTGGGGACTCCGTTCTCCTAAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAGGCGGGTGGAAGATATTGTTCCACAATCCATTGGATATCAGGTTCAGGAGATTGTGAATGAATTTGCAAGTGTGGAATTTGCACTTGACCCCTTAGAGAAGCAAGTTGGTGATGATCTAATTGCATTGCTCCAGCAGGGCAAGAAGTTTGACGAAGATAGTGAAAGTTATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATCACATCTTCAAGAGCAGCTCTTGCCGAAAGAAGAGCTCTCAAGAAACTTATAGACAAGGCTCGGGCTGAGGAGGACAAACGAAAGGAATCAATTGTTGCATATCTTTTGCATCTTATGAGGAAGTACTCCAAGTTATTCAGAAATGAGTTTTCAGACGATACTGATTCTCAGGGTTCTGGTCCTTGTTCTCCCACTGTTCAGGGATCTAATGAGGACGGTGTTCCCGTTTCTCATAATCAGGCTTTTGGCAGACAGCTTTCAAAACTTAGTTCCTTTAGTTTCACGCCAAATAATACTATGGAGCCGGGGCAGATGGCTCTACCACCTGAGGAGTTAAGGTGTCCAATATCTCTGCAACTTATGTATGATCCAGTTATTATTGCTTCGGGGCAAACATATGAAAGGGTTTGCATAGAGAAATGGTTCGGTGATGGGCACAACAACTGCCCAAAGACCCAACAGAATCTTCCACATCTTTGCTTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGCGAACAAAATGGAATTCCTATTCCCGAAGGCCCTCCTGAGTCTCTTGATCTTAACTACTGGAGATTGGTAATATCAGAGTCTGAGTCTGCAAATTCAAGATCTGTAAATAGTGTCAGCTCTTGCAAACTGAAGGGTGTCAGAGTGGTTCCTTTAGAAGAGAGTTGTAACTCAAAGGAATATGGGGAAAATGAAGCTGAAAGTGTATCTGCACAAGAGGAAGACACCGAGCAGTATGTTAATTTTCTGAAAGTCTTGACTGAGGAGAACAATTGGAAGGGGAAATATGAAGTGGTAGATAAGTTAAGGCTGTTGCTGAGGGATGATGAAGAAGCTAGGATTCTTATGGGGGCTAATGGGTTTGTTGAAGCACTTGTTCTGTTTTTACAATCGGCTTTACATGAAAGGAATTTGATGGCTCAGGAAAGCGGAGCAATGGCTCTTTTCAACATAGCTGTGAATAATGACAGAAATAAGGAGATTATGTTATCAGCTGGAGTTTTATCTTTGTTGGAGGAGATGATTTCTAGCACTAGTTCTTATGGTTGTGCAACTGCTCTATATCTGAATCTCTCTTGCCTTGAAGAAGCCAAACCTATGATTGGCATGAGCCAGGCTGTACGGTTCCTAACCCAGCTCCTTCAATCTGACTATGACATTCAATACAAGCATGATTCTCTCCATGCTCTCTATAATCTTTCTACTTTGCCCTCCAATATTCCATACTTACTTTCATCTGGCATTGTTAATGGCCTACAATCCCTTCTTGTAGACCAGGGTGATGATTGTACATGGACAGAAAAATGCATAGCTATTTTGATAAATTTAGCCACTTCTCAAGTTGGCAGGGAGGAAATGGTATCAACTCCTGGACTAATTAGTGCACTGGCTTCAATATTGGACACTGATGAGCTCGAAGTGCAGGAGCAAGCTGTCTCTTGCCTCCTAATTTTGTGCAATAGAAGTGAGCAGTGTTCTGATATGGTCCTGCAAGAAGGAGTTATACCTGCACTGGTATCAATATCAGTGAATGGGACCTCAAGAGGACAAGAAAAAGCTCAGAAACTCCTGATGCTGTTCCGACAGCAGCGACGAGATGAATCACCTGTTGAGGCTCACGAGTGTCCGCCTGAAACTAGTGATTTGTCTGTGCCACCTGCTGAAATGAAACCTTTATGTAAGTCGATGACTAGAAGAAAGACTGGGAAAGGTTTTGGCTTTTTCTGGAGAAGCAAGAGCTATTCAGTATACCAGTGTTGA 2304 0.4219 MMDVAAEVEENLFAVSDAKLHGQMCKTLSIVYCKVLSIFPSLEAARPRSKTGIQALCSLHVALEKAKNVLHHCSVCSKLYLAVTGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGYQVQEIVNEFASVEFALDPLEKQVGDDLIALLQQGKKFDEDSESYELESFHQAATRLGITSSRAALAERRALKKLIDKARAEEDKRKESIVAYLLHLMRKYSKLFRNEFSDDTDSQGSGPCSPTVQGSNEDGVPVSHNQAFGRQLSKLSSFSFTPNNTMEPGQMALPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFGDGHNNCPKTQQNLPHLCLTPNYCVKGLVASWCEQNGIPIPEGPPESLDLNYWRLVISESESANSRSVNSVSSCKLKGVRVVPLEESCNSKEYGENEAESVSAQEEDTEQYVNFLKVLTEENNWKGKYEVVDKLRLLLRDDEEARILMGANGFVEALVLFLQSALHERNLMAQESGAMALFNIAVNNDRNKEIMLSAGVLSLLEEMISSTSSYGCATALYLNLSCLEEAKPMIGMSQAVRFLTQLLQSDYDIQYKHDSLHALYNLSTLPSNIPYLLSSGIVNGLQSLLVDQGDDCTWTEKCIAILINLATSQVGREEMVSTPGLISALASILDTDELEVQEQAVSCLLILCNRSEQCSDMVLQEGVIPALVSISVNGTSRGQEKAQKLLMLFRQQRRDESPVEAHECPPETSDLSVPPAEMKPLCKSMTRRKTGKGFGFFWRSKSYSVYQC 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05585 767 SMART arm_5 542 583 IPR000225 GO:0005515
Vivi5g05585 767 SMART arm_5 502 541 IPR000225 GO:0005515
Vivi5g05585 767 SMART arm_5 457 501 IPR000225 GO:0005515
Vivi5g05585 767 SMART arm_5 626 668 IPR000225 GO:0005515
Vivi5g05585 767 FunFam RING-type E3 ubiquitin transferase 281 355 - -
Vivi5g05585 767 SUPERFAMILY RING/U-box 280 357 - -
Vivi5g05585 767 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Vivi5g05585 767 CDD RING-Ubox_PUB 283 335 IPR045210 -
Vivi5g05585 767 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 514 IPR000225 GO:0005515
Vivi5g05585 767 Gene3D - 402 718 IPR011989 -
Vivi5g05585 767 SUPERFAMILY ARM repeat 430 710 IPR016024 -
Vivi5g05585 767 MobiDBLite consensus disorder prediction 226 251 - -
Vivi5g05585 767 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Vivi5g05585 767 MobiDBLite consensus disorder prediction 716 735 - -
Vivi5g05585 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 355 IPR013083 -
Vivi5g05585 767 Pfam U-box domain 283 352 IPR003613 GO:0004842|GO:0016567
Vivi5g05585 767 Coils Coil 177 197 - -
Vivi5g05585 767 PANTHER U BOX DOMAIN-CONTAINING 23 712 - -
Vivi5g05585 767 MobiDBLite consensus disorder prediction 224 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05585 Vivi-Chr5 159068352 159073775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05585 2 766 U-box Gene Family AT1G24330 65.385 0.0 1008
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05585 - - gmx:100794099 1242.64