LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g05575	ATGGTTAAGTACTCAAGAGAGCCCGATAATCCCACCAAGTCCACCAAGGCACGAGGTGCAGATCTTAGAGTTCATTTCAAGAACACTAGGGAAACAGCGTTTTCCATCAGGAAGATGCCCTTGATCAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAACAAGCCATTCCATTCAGACGTTTTTGCCGTGGTGTTGGGAGGACAGCCCAGGCCAAAAGCAGACACTCCAATGGACAAGGGAGGTGGCCTGCCAAGTCTGCTAAGTTCATCCTTGATTTGCTCAAGAATGCAGAGAGTAATGCCGAAGTGAAAGGTTTGGATGTTGATGCACTATATGTTTCCCATATCCAAGTCAACCAAGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAACCCTTACATGTCATCCCCATGCCACATAGAGTTGATTTTATCTGAAAAGGAAGAAGCTGTTAAGAAAGAGCCTGAGACCCAGTTGGCTTCTAGCAAGAGGAAGGCTTAA	522	0.4655	MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPLIKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVKKEPETQLASSKRKA	173

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g05575	173	ProSitePatterns	Ribosomal protein L22 signature.	127	151	IPR018260	GO:0003735\|GO:0005840\|GO:0006412
	Vivi5g05575	173	FunFam	60S ribosomal protein L17	1	173	-	-
	Vivi5g05575	173	NCBIfam	50S ribosomal protein L22	4	154	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Vivi5g05575	173	SUPERFAMILY	Ribosomal protein L22	1	154	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Vivi5g05575	173	Hamap	50S ribosomal protein L22 [rplV].	2	154	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Vivi5g05575	173	PANTHER	60S RIBOSOMAL PROTEIN L17	1	172	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Vivi5g05575	173	CDD	Ribosomal_L22	16	151	IPR001063	GO:0003735\|GO:0005840\|GO:0006412
	Vivi5g05575	173	Gene3D	Ribosomal protein L22/L17	1	173	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Vivi5g05575	173	Pfam	Ribosomal protein L22p/L17e	17	152	IPR001063	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g05575	Vivi-Chr5	158972710	158975259	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi5g05575	1	173	Cytoplasmic Ribosomal Protein Gene Family	AT1G27400	87.283	1.26e-114	321

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g05575	K02880		-	gmx:100499784	329.331

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi5g05575	5	158972710	158975259	Vivi5g05575	5	158972710	158975259	ECH
	Vivi3g03365	3	56689411	56690960	Vivi5g05575	5	158972710	158975259	PCT