Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05563 ATGGAGTTGAATGCAAAATCTCCTTCTTCACAGTGGGAATGTGATAATAACCTAACATTTTTCAATACAAAAGCAATTGAAAATCCTAAATTCCAACCACTGAATCAGAGTATCGAATTAGACCGAGAAAACAATGTCGGGCTGTTCGATACGTCTACGCCCGGTGGAAGTGGTTGCTCTGGGTCTGAGTTAATTCATGATTCTACATCAAGGTGTTCGAAATCAGTTTCAATCGGTTCATCATGGAATTGGGATAAGGGTAATAGCAAAACATGTGTATTTGCTTTTGAAAATTCCCATGATTCCAATGATAAAATGGAATTATCTAAAGAAGATTCAATTGAAAATTCTAATGCGCCAGGGGTTTCTTTGGTATCTGGTGAACCATTGCTCACTCTAAAACTCGGTAAACGGATGTACTTTGAGAGTTCTAATGCACTAGAAAGTGACCCCAAAAACTTATCTATTTTTGGGGATTCCATGTCAAATTTAAGTATTGGAAAAAAATGTAAGTCCGATGGTCGGAACTTACAATGTTGGCGCTGTCAAGTGGAAGGTTGTGGCCTTGACCTTTCATCAGCGAAAGATTATTATCGCAAACATAAAGTTTGTGAAAGTCATTCCAAATCTCCTAAAGTGGTTATAGCTGGTTTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTTTTTGAGTTCGATGAAAAAAAGAGAAGCTGTAGACGACGTCTTTCACATCACAATGCAAAGCGGCGTAAACCTCGTCCTTCTGATGTTGTCCAATCAAGTCAATCTGCTCTGTTGTCTTCTCGATGTGATGGAGAGCAACAGATGAGTCCATTTTCGTATTCGAAGACTGCTACAAATTTAGCCATTAAAAACATAGACAACAACATGCTCCTCCAAACAAAAGATTTTCTCTTGAAGCCTGCAAATGATAACATTGACGCACCAAGTACTGTCACTATGCTTTCAGACAATTCCAATGTCAATTTTACATCCAAAGTCGTTGCAACCAAGAGTATCAATCCAGGTGTAGAAGATTTCATTACCTTTTCTGATACAAATGCAACACAAGACTTTACTTGTGCTCTCTCTCTTCTGTCAACCAATCCGTGGGATTCATATGCGACTGAATCTATTTCTCTAGAACATTCTAATCGCACTAGCAGTTGTGCTCAAGCCCTAACACATGCAATGAGTCAGGGTACTCCGCTCGCTTCACCAGAATATATTAGTGAACATGATCACCATGTCAATTCCAGTATGTGGATGTCAGACTCAAACTGTGAAGAAAGCAATCACTTTCAAGAATTTCAACTGCTGAGAGAACCTTATGAATCTGGTTTTCATCAGTTGGACTAA 1371 0.3917 MELNAKSPSSQWECDNNLTFFNTKAIENPKFQPLNQSIELDRENNVGLFDTSTPGGSGCSGSELIHDSTSRCSKSVSIGSSWNWDKGNSKTCVFAFENSHDSNDKMELSKEDSIENSNAPGVSLVSGEPLLTLKLGKRMYFESSNALESDPKNLSIFGDSMSNLSIGKKCKSDGRNLQCWRCQVEGCGLDLSSAKDYYRKHKVCESHSKSPKVVIAGLERRFCQQCSRFHALFEFDEKKRSCRRRLSHHNAKRRKPRPSDVVQSSQSALLSSRCDGEQQMSPFSYSKTATNLAIKNIDNNMLLQTKDFLLKPANDNIDAPSTVTMLSDNSNVNFTSKVVATKSINPGVEDFITFSDTNATQDFTCALSLLSTNPWDSYATESISLEHSNRTSSCAQALTHAMSQGTPLASPEYISEHDHHVNSSMWMSDSNCEESNHFQEFQLLREPYESGFHQLD 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05563 456 Gene3D - 173 243 IPR036893 GO:0003677|GO:0005634
Vivi5g05563 456 FunFam Squamosa promoter-binding-like protein 14 173 243 - -
Vivi5g05563 456 SUPERFAMILY SBT domain 180 260 IPR036893 GO:0003677|GO:0005634
Vivi5g05563 456 Pfam SBP domain 182 255 IPR004333 GO:0003677
Vivi5g05563 456 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 70 391 IPR044817 GO:0003677
Vivi5g05563 456 ProSiteProfiles Zinc finger SBP-type profile. 179 256 IPR004333 GO:0003677
Vivi5g05563 456 MobiDBLite consensus disorder prediction 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05563 Vivi-Chr5 158726379 158731121 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05563 1 400 SBP-box Gene Family AT5G43270 36.408 1.85e-51 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi5g05563 SBP 2.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05563 - - mtr:25501754 434.491