Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05559 ATGTGGCTGAAATGGTGGGAGAAGATTTCAGGGAATGGTTACAAAATCAATCGACAGTATTATCAGTATATTGGGTCAAAGAGAGTGAAGAGAGAGTTTTGGAGGAGGCTTTTGTTGACATGGGTATTGGGTTGGACTGTGGTGTCTTTGTGGATCTTTTGCTTTATGAGTTTACAAGCTACTGAGAAGAGGAAAGAAACTCTTGCAAGTATGTGTGATGAAAGGGCTAGGATTGTTCAGGATCAGTTTAATGTTAGTATGAACCATATTCAAGCTATGTCTATTTTGATCTCAACTTTTCATCATTCCAAGAGCCCCTCAGCCATTGATCAGAGGACTTTTGCTAGCTACACAGAAAGAACAGCATTTGAGAGGCCTTTAACAAGTGGTGTTGCATATGCTGTAAGAGTGCTTCATTATGAGAGGGAACAATTTGAGAAGCAACAAGGTTGGGTTATCAAGAGAATGGATACTCTGGAGCAGAATCCAGTTCATAAGGATGATTATGATACAGAAGCATTGGAGCCATCTCCTATTCAGGAAGAATATGCTCCTGTCATATTTGCACAAGATACAATCTCACATGTCATTTCGGTTGATGTGCTTTCTGGAAAGGAAGATCGCGATAATGTGTTGCGTGCGAGAGAATCAGGCAAAGGAGTTTTAACTGCGCCTTTCAGGCTTCTCAAATCAAATCGTCTAGGTGTTATACTAACATTTGCTGTTTACAAGAGATATCTTCCATCAAATGCAACTCCAAATGAAAGGATTCAAGCAACTAATGGGTATATTGGCGGGGTATTTGATGTCGAATCATTAGTCGAGAAATTGCTTGAGCAACTTGCTAGCAAGCAAAGTGTAATTGTTAATGTGTATGACACTACAAATCATACACATCCAATTGCAATGTATGGCTCAAATATAACCGGGGATGTGTTCAATCATGTCAGCACTCTTAACTTTGGAGACCCTTTCAGAAAACATGAGATGCATTGTAGGTTCAAACATAAACCACCATGGCCTTGGGTTGTGATAACTACTTCAATTGGAATTCTTGTTATTGCTCTCCTTGTTGGACATATTTTCTATGCCACGGTGAATCGAATTGCCACAGTAGAAGAGGATTGCCGAGAGATGATGGAGCTTACAAAACGCGCAGAAGCAGCCGATGTAGCAAAATCACAGTTTCTTGCCACTGTCTCGCACGAAATCAGAACACCGATGAATGGTGTTTTAGGGATGATGCATATGCTTATGGACACAGATTTAGATGTAACACAGCAAGAATATGTCAGAACAGCACAGGAAAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTTTGGATCAGGCCAAGATTGAATTTGGTAAGCTTGAGCTTGAGAAAGTGCTTTTTGACATACGCTCGATTTTGGATGATGTATTGTTACTATTTTCTGATAAGTCCCAAGGAAAAGGAGTAGAGTTGGCAGCTTATGTTTCAGATCATGTTCCGAAACTACTAATAGGCGACCCGGGAAGGTTTCGTCAAATCATTACTAATCTCATGGGAAACTCAATTAAGTTCACGGACAAAGGACATATTTTTGTGACCATTCATCTTGTTGAAGAGATTGTTCATTCCATAGAGGTTGACAATGAATCAAATCCCGAAAACACTTTGAGCGGTTTCCCCGTTACGAATAGTTGCTTGAGTTGGAAGGGATTCAAGGCTTTCAGCCAAGAAGGACCACTTGGTTCCTTCTCTTCCACCTCTACTGATCTCATCAATTTGATTGTATCAGTTGAAGATACCGGCGATGGTATTCCTAGAGAATCTCAACCCCTCATCTTCACTCCATTCATGCAAGCAGGTTCGTCCATCTCGCGAAAACATGGAGGAACTGGCATTGGACTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAAGGGTGAAATTGGATTTGCAAGTGAACCAAAAACAGGTTCCACTTTCACTTTTACCGCGGTATTCACCAATGGACTCCTCAGTTCTAACGAGAGTAAAACACCGCAAATCAATAACCAATCTCAACCTGCATCTTCAGAATTCGAGGGTATGAACGCGTTGGTCATTGATCCAAGGCCTATTAGAGGCAAAGTATCTCAATATCACATCCAACGCCTCGGCATCCACGTTGAAACGGTTTCGGATTTGAACCAAGGTTTATCAACCATAAACAAAGGGAATGCCGTTATCAACATTGTCTTGATTGATCAAGAAGTTTGGTATAGAGATTCAAGCATGTCATCTCATTTTTTCAATAGCACAAGGAAAGTCGATCCCGGTCTTCCTCCAAAGCTATTCATTCTTGTTAACTCTAGTAGTAGCTCTCCTAAAACTAGCAGTGTAACCTCAGATGTTGATAATCCTACTATCATTACAAAGCCTCTTAGAGCAAGCATGCTCGCTGCGTCACTACAGCGAGCAATGAATGTCAGGGACAAGAGAACTCTAAATAGAGACCTTCACAATTTGTCTCTTAGCCATCTTCTTGTTGGGAGGAAAATTCTAATTGTAGACGACAATGGCGTGAACCGCGCAGTAGCAGCCGGTGCTTTGAAAAAGTATGGAGCAGAAGTGGTTTGTGTTAGCAGTGGAAAAGACGCTATCTCTTCGCTGAAGCCGCCTCATCAGTTCGACGCTTGTTTCATGGATATTCAAATGCCAGAAATGGACGGTTTTGAAGCTACGAAGAGAATCAGAGAGATGGAACATAATGAGAACATGGAAGTATCTATAAAGTGGCATGTGCCGATTTTAGCTATGACTGCAGATGTGATTCAAGCTACACATGAGGAATGCTTAAGGTGTGGAATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTTTATAGAGAAGTTTGTCGGTTTTTTCTGGCATCTTAA 2916 0.4112 MWLKWWEKISGNGYKINRQYYQYIGSKRVKREFWRRLLLTWVLGWTVVSLWIFCFMSLQATEKRKETLASMCDERARIVQDQFNVSMNHIQAMSILISTFHHSKSPSAIDQRTFASYTERTAFERPLTSGVAYAVRVLHYEREQFEKQQGWVIKRMDTLEQNPVHKDDYDTEALEPSPIQEEYAPVIFAQDTISHVISVDVLSGKEDRDNVLRARESGKGVLTAPFRLLKSNRLGVILTFAVYKRYLPSNATPNERIQATNGYIGGVFDVESLVEKLLEQLASKQSVIVNVYDTTNHTHPIAMYGSNITGDVFNHVSTLNFGDPFRKHEMHCRFKHKPPWPWVVITTSIGILVIALLVGHIFYATVNRIATVEEDCREMMELTKRAEAADVAKSQFLATVSHEIRTPMNGVLGMMHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEKVLFDIRSILDDVLLLFSDKSQGKGVELAAYVSDHVPKLLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEIVHSIEVDNESNPENTLSGFPVTNSCLSWKGFKAFSQEGPLGSFSSTSTDLINLIVSVEDTGDGIPRESQPLIFTPFMQAGSSISRKHGGTGIGLSISKCLVGLMKGEIGFASEPKTGSTFTFTAVFTNGLLSSNESKTPQINNQSQPASSEFEGMNALVIDPRPIRGKVSQYHIQRLGIHVETVSDLNQGLSTINKGNAVINIVLIDQEVWYRDSSMSSHFFNSTRKVDPGLPPKLFILVNSSSSSPKTSSVTSDVDNPTIITKPLRASMLAASLQRAMNVRDKRTLNRDLHNLSLSHLLVGRKILIVDDNGVNRAVAAGALKKYGAEVVCVSSGKDAISSLKPPHQFDACFMDIQMPEMDGFEATKRIREMEHNENMEVSIKWHVPILAMTADVIQATHEECLRCGMDGYVSKPFEAEQLYREVCRFFLAS 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05559 971 FunFam Histidine kinase 4 109 338 - -
Vivi5g05559 971 Gene3D - 838 969 - -
Vivi5g05559 971 PRINTS Bacterial sensor protein C-terminal signature 610 620 IPR004358 GO:0016310|GO:0016772
Vivi5g05559 971 PRINTS Bacterial sensor protein C-terminal signature 627 645 IPR004358 GO:0016310|GO:0016772
Vivi5g05559 971 PRINTS Bacterial sensor protein C-terminal signature 592 606 IPR004358 GO:0016310|GO:0016772
Vivi5g05559 971 PRINTS Bacterial sensor protein C-terminal signature 651 664 IPR004358 GO:0016310|GO:0016772
Vivi5g05559 971 SMART HisKA_10 392 457 IPR003661 GO:0000155|GO:0007165
Vivi5g05559 971 FunFam Histidine kinase 4 364 455 - -
Vivi5g05559 971 SUPERFAMILY CheY-like 841 966 IPR011006 -
Vivi5g05559 971 Pfam His Kinase A (phospho-acceptor) domain 392 455 IPR003661 GO:0000155|GO:0007165
Vivi5g05559 971 CDD HATPase_EvgS-ArcB-TorS-like 509 665 - -
Vivi5g05559 971 ProSiteProfiles Histidine kinase domain profile. 399 667 IPR005467 -
Vivi5g05559 971 SMART REC_2 842 964 IPR001789 GO:0000160
Vivi5g05559 971 SMART CHASE_2 105 306 IPR006189 -
Vivi5g05559 971 ProSiteProfiles CHASE domain profile. 105 331 IPR006189 -
Vivi5g05559 971 SMART HKATPase_4 504 667 IPR003594 -
Vivi5g05559 971 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 378 458 IPR036097 GO:0000155|GO:0007165
Vivi5g05559 971 Gene3D CHASE domain 109 338 IPR042240 -
Vivi5g05559 971 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 504 665 IPR003594 -
Vivi5g05559 971 SUPERFAMILY CheY-like 691 820 IPR011006 -
Vivi5g05559 971 PANTHER TWO-COMPONENT HISTIDINE KINASE 70 961 - -
Vivi5g05559 971 Pfam Response regulator receiver domain 844 962 IPR001789 GO:0000160
Vivi5g05559 971 CDD HisKA 392 453 IPR003661 GO:0000155|GO:0007165
Vivi5g05559 971 CDD REC_hyHK_CKI1_RcsC-like 844 964 - -
Vivi5g05559 971 Gene3D - 362 455 - -
Vivi5g05559 971 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 446 662 IPR036890 -
Vivi5g05559 971 CDD PRTases_typeI 796 871 IPR000836 -
Vivi5g05559 971 Gene3D - 456 667 IPR036890 -
Vivi5g05559 971 ProSiteProfiles Response regulatory domain profile. 843 968 IPR001789 GO:0000160
Vivi5g05559 971 ProSiteProfiles Response regulatory domain profile. 695 818 IPR001789 GO:0000160
Vivi5g05559 971 Pfam CHASE domain 108 304 IPR006189 -
Vivi5g05559 971 Gene3D - 56 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05559 Vivi-Chr5 158669136 158674155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05559 1 968 Miscellaneous Gene Families AT1G27320 68.094 0.0 1343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi5g05559 CHASE 6.2e-36 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05559 K14489 - gmx:100801546 1613.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05559 5 158669136 158674155 Vivi5g05559 5 158669136 158674155 ECH