Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05557 ATGGCATCTGGTTACGAATATGATATCAATGATCTGTATCAAGAAGCTCAAAGGAGATGGTTGAAGCCGGCAGAAGTGATGTACATTTTGCAGAATAATGAAAAGTACCAGTTCACTCAAGAGCCACCGCAACAGCCAACAAGTGGTTCCCTATTTCTGTTTAACAGAAGAGTACTGCGTTTCTTCCGTAAAGATGGTCATGCTTGGCGGAAGAAAAGAGATGGAAGAGCTGTAGGAGAAGCCCACGAACGGCTGAAGGTTGGAAATGTTGAAGCCATAAACTGTTACTATGCACATGGAGAGCAGAACCCTAATTTCCAGAGACGGAGCTATTGGATGTTGGACCCGGAATTTGACTATATTGTTCTCGTTCATTACAGAGACACGGGCGAGGGAAGGCTCAGTTCTGGACCTGGCACACAATTGTCACCGGGTTCCTCTTCTGCGTTCAGTCAGAGTCCTAGGTCGTTTAATACTCAGAATCGAGGTTCAACGTTTGTTGATGATTCCTATGGACCTAATCAGAGTTTCTCCAGTCCTGGATCTGCAGAAGTTACCTCTGATATATTCATTTTGAACAATGGAATGGGTCACTCTGAAGGAACGGAAGCAGAATCAGGAACCTCAACTGAACTTAAGGTTACTCAAGCTTTACGCCGATTGGAGGAGCAGTTAAGTTTGAATGATGAAAGCTTTGAAGAAATTGTTCCCTTCTACAATGAGAATGAAGCTACCCATGATTCAAAACCACAGAATCATCAAGGGGTGATCTACAAGCAAGAGGAATCTGCTTCTCTCTCTGGACCAAATAGTCAGGGGCTGCTATATGACGGATATAATGGGAGGCAAGGTGATAGTGGTGAAAGTTATTGTGAATTACTAGACCGTAATTTCGCTGATGGAAATGAAAAGGCTTTATCTTGGAAAAATGTATACTTGCCTGCTGAAAATCAAGAGAGCTCACAATCTTCAATAAGGGAACCAGTTACGAACCAGGAAAACTGTTGGAGGACAAATTTCAACACTGATAATGCTGGAAACTCTGTTTTCTCACTACCTCAAGGTGTTGGTGGAGGCACACTTCCATATTCTTCTATGGTAGAAACACAAGATACTCGTTCTGGCTACTATGCACCATTGTTTGACCAAAGCCAAATTGGAGCATCTCATGATGCATGTTCAAGCTTAACAGTTTCACAAAAACAGAAATTTACTATTAAGGCAATCTCCCCAGAATGGGGTTATGCCTCTGAGACTACAAAGGTTTTCATTATTGGATCTTTTCTTTGTCGTCCCTCTGATTCTGCCTGGGCCTGTATGCTTGGTGACGTTGAAGTTCCCGTTGAGATAATTCAGGATGGTGTAATGTGTTGTGAAGTTCCATCTCACATTCCTGGAAATGTTACTTTGTGTATTACTTCTGGAAACCGAGAGTCATGCAGTGAAGTAAGAGAGTTTGAGTATCGTGATAACACCAAGAGTTGCACCAAATGTAGTCCATTGCAAATAGAAGGCACTAGAACTCCAGACGAGCTGTTATTACTTGCTAGATTTGGGCAGGTGCTCCTTTCCGCGTCACCTATAAGTGATGATAACAATGAATCGGGAATTTTCATAAAACAGAAAGCTGATGATGATTCATGGAGCCATATTATAGATTCTCTTCTATTTGGCGGTGGAACTTCTTCTAGTACTTCCAATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTACAGCAGTGGCTTACTTGCAGATCCAGGAGAGTAGATGAAGAAACAGGCTGTTCGTTGACCAAGAAAGAACAAGGGATTATTCACATGGTTGCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCTATTCTCAGCTGTGGTGTGAATATAAATTTCCGCGACATCAGCGGGTGGACTGCCCTTCATTGGGCTGCACGTTTTGGGAGGGAAAAAATGGTTGCGTCGCTTTTAGCATCTGGTGCATCTGCTGGAGCAGTGACAGATCCTAATAAACAAGATCCAATTGGTAAAACTGCAGCATCAATTGCAGCCAGCAGCGGACATAAAGGACTGGCAGGGTATCTTTCAGAGGTAGCTATAACAAGCCACCTGTCATCTCTTACACTTGAAGAGAGTGAGCTATCTAAAAGTTCTGCGGAGCTTCAAGCTGATTTAACTGTTAGTAATGCCTCCAAGGAAAATATTGCTTTCAGTGAGGACCGGGCCTCGCTCAAAGATTCGTTAGCTGCTGTAAGAAATACAACTCAGGCAGCTGCTCGAATACAAGCTGCTTTTCGTTCACATTCATTTAGAAAACGGAGAGTAAAAGAAGCAGTTGGTGTTATGAGTGGACATAATATCGATGCAAATAGCATTGAAGACATGCCAGAGCTTTATGCTTTATCAAAACTGGCCTTTCGGAACTCACGAGAACATAACTCAGCTGCATTATCAATTCAGAAAAAATATCGAGGTTGGAAAGATCGAAGGGATTTCTTATCATTGCGCCAAAAAGTTGTGAAGATACAGGCTCATGTGAGGGGTTACCAAGTTAGGAAGCATTACCGAGTATTATGGGCGGTTGGAATCTTGGACAAAGTTGTGCTAAGATGGCGTAGAAAAGGAGTTGGTTTGCGAGGTTTCAAACCAGAGACGGAGATTAATGAAAATGAAGATGAAGATATTCTCAAGGTGTTCAGAAAACAGAAAGTAGATGTTGAAATCAAAGAGGCTGTCTCAAGGGTGCTGTCCATGGTCAAATCTCCTGATGCTCGGGATCAATATCATCGCATGCTTGAGAAGTACCGTCAAGCCAAGGCTGAACTTGCGAGTACGAGTGAAGAAAAATTGATAACAACTTCTATAGAAGATTATTTAAACATGGAGGATGATTCTTATCAATATCCCTAG 2901 0.4247 MASGYEYDINDLYQEAQRRWLKPAEVMYILQNNEKYQFTQEPPQQPTSGSLFLFNRRVLRFFRKDGHAWRKKRDGRAVGEAHERLKVGNVEAINCYYAHGEQNPNFQRRSYWMLDPEFDYIVLVHYRDTGEGRLSSGPGTQLSPGSSSAFSQSPRSFNTQNRGSTFVDDSYGPNQSFSSPGSAEVTSDIFILNNGMGHSEGTEAESGTSTELKVTQALRRLEEQLSLNDESFEEIVPFYNENEATHDSKPQNHQGVIYKQEESASLSGPNSQGLLYDGYNGRQGDSGESYCELLDRNFADGNEKALSWKNVYLPAENQESSQSSIREPVTNQENCWRTNFNTDNAGNSVFSLPQGVGGGTLPYSSMVETQDTRSGYYAPLFDQSQIGASHDACSSLTVSQKQKFTIKAISPEWGYASETTKVFIIGSFLCRPSDSAWACMLGDVEVPVEIIQDGVMCCEVPSHIPGNVTLCITSGNRESCSEVREFEYRDNTKSCTKCSPLQIEGTRTPDELLLLARFGQVLLSASPISDDNNESGIFIKQKADDDSWSHIIDSLLFGGGTSSSTSNWLLEELLKDKLQQWLTCRSRRVDEETGCSLTKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDISGWTALHWAARFGREKMVASLLASGASAGAVTDPNKQDPIGKTAASIAASSGHKGLAGYLSEVAITSHLSSLTLEESELSKSSAELQADLTVSNASKENIAFSEDRASLKDSLAAVRNTTQAAARIQAAFRSHSFRKRRVKEAVGVMSGHNIDANSIEDMPELYALSKLAFRNSREHNSAALSIQKKYRGWKDRRDFLSLRQKVVKIQAHVRGYQVRKHYRVLWAVGILDKVVLRWRRKGVGLRGFKPETEINENEDEDILKVFRKQKVDVEIKEAVSRVLSMVKSPDARDQYHRMLEKYRQAKAELASTSEEKLITTSIEDYLNMEDDSYQYP 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05557 966 FunFam Calmodulin-binding transcription activator 4 isoform A 516 698 - -
Vivi5g05557 966 ProSiteProfiles IQ motif profile. 832 857 IPR000048 GO:0005515
Vivi5g05557 966 MobiDBLite consensus disorder prediction 261 277 - -
Vivi5g05557 966 MobiDBLite consensus disorder prediction 134 183 - -
Vivi5g05557 966 Pfam Ankyrin repeats (3 copies) 615 693 IPR002110 GO:0005515
Vivi5g05557 966 SMART CG_1_2 12 130 IPR005559 GO:0003677
Vivi5g05557 966 FunFam Calmodulin-binding transcription activator 2 399 493 - -
Vivi5g05557 966 SMART iq_5 808 830 IPR000048 GO:0005515
Vivi5g05557 966 SMART iq_5 750 772 IPR000048 GO:0005515
Vivi5g05557 966 SMART iq_5 831 853 IPR000048 GO:0005515
Vivi5g05557 966 Pfam IQ calmodulin-binding motif 811 829 IPR000048 GO:0005515
Vivi5g05557 966 Pfam IQ calmodulin-binding motif 834 853 IPR000048 GO:0005515
Vivi5g05557 966 MobiDBLite consensus disorder prediction 132 183 - -
Vivi5g05557 966 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Vivi5g05557 966 Pfam IPT/TIG domain 405 488 IPR002909 -
Vivi5g05557 966 FunFam Calmodulin-binding transcription activator 2 808 856 - -
Vivi5g05557 966 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 798 856 IPR027417 -
Vivi5g05557 966 ProSiteProfiles Ankyrin repeat profile. 633 665 IPR002110 GO:0005515
Vivi5g05557 966 ProSiteProfiles IQ motif profile. 809 838 IPR000048 GO:0005515
Vivi5g05557 966 Gene3D Immunoglobulins 398 495 IPR013783 -
Vivi5g05557 966 SUPERFAMILY E set domains 405 489 IPR014756 -
Vivi5g05557 966 SUPERFAMILY Ankyrin repeat 602 694 IPR036770 -
Vivi5g05557 966 ProSiteProfiles IQ motif profile. 751 780 IPR000048 GO:0005515
Vivi5g05557 966 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Vivi5g05557 966 SMART ANK_2a 633 662 IPR002110 GO:0005515
Vivi5g05557 966 SMART ANK_2a 672 701 IPR002110 GO:0005515
Vivi5g05557 966 ProSiteProfiles Ankyrin repeat region circular profile. 633 659 - -
Vivi5g05557 966 Gene3D - 808 857 - -
Vivi5g05557 966 MobiDBLite consensus disorder prediction 261 280 - -
Vivi5g05557 966 CDD IPT 405 490 - -
Vivi5g05557 966 Gene3D - 562 698 IPR036770 -
Vivi5g05557 966 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 938 - -
Vivi5g05557 966 Coils Coil 925 945 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05557 Vivi-Chr5 158656173 158662617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05557 3 963 CAMTA Transcription Factor Family AT1G67310 51.282 0.0 884
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vivi5g05557 CG-1 8.2e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05557 K21596 - gmx:100786880 1382.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05557 5 158656173 158662617 Vivi5g05557 5 158656173 158662617 ECH
Vivi3g03404 3 57203440 57211557 Vivi5g05557 5 158656173 158662617 PCT