Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05548 ATGGAGTTGAATGCAAAATCTCCTTCTTCACAGTGGGAATGTGATAATAACCTAACATTTTTCAATATAAAAGCAATTGAAAATCCAAAATTACAACCACTGAATCAGAGTATCGAATTAGACCGAGAAAACAATGTCGGGCTGTTCGATACGTCTACACCCGGTAGAAGTGGTTGCTCTGGGTCTGAGTTAATTCATGATTCTACATCAAGGTGTTCGAAATCAGTTTCAATCGGTTCATCATGGAATTGGGATAAGGGTAATAGCAAAACATGTGTATTTGCTTTTGAAAATTCCCATGATTCCAATGATAAAATGGAATTATCTAAAGAAGATTCAATTGAAAATTCTAATGCGCCAGGGGTTTCTTTGGTATCTGGTGAACCATTGCTCACTCTAAAACTCGGTAAACGGATGTACTTTGAGAGTTCTAATGCACTAGAAAGTGATCCCAAAAACTTGTCTATTTTTGGGGATTCTATGTCAACTTTGAGTATTGGTAAGAAATGTAAGTCCGATGGTCGGAACTTACAATGTTGGCGCTGTCAAGTGGAAGGTTGTGGCCTTGACCTTTCATCAGCGAAAGATTATTATCGCAAACATAAAGTTTGTGAAAGTCATTCCAAATCTCCTAAAGTGGTTATAGCTGGTTTGGAACGACGGTTTTGCCAGCAATGTAGCAGGTTCCATGCTCTTTTTGAGTTCGATGAAAAAAAGAGAAGCTGTAGACGACGTCTTTCACATCACAATGCAAAGCGCCGTAAACCCCGTCCTTCTGATGTTGTTCAGTCAAGTCAATCAGCTCTGTCGTCTTCACGATGTGATGATGAGCTACAGATGAGTCCATTTTCGTATTCAAAGACTGCTACAAATTTAGCTATGCAAAACATAGACAACAACAACATGCTCCTCCAAACAAAAGATTTTCTCTTGAAGCCTGCAAATGATAACATTGACACACCAAGTACTGTCACTATGCTTTCTGACGATTCTAATGTCAATTTTACATCCAAAGTCATTGCAACCAAGAGTATCAATCCAGGTGTAGAAGATTTCATTACCTTTTCTGATACAAATGCAACACAAGACTTTACTTGTGCTCTCTCTCTTCTGTCAACCAATCCGTGGGATTCATATGCGACTGAATCTATTTCTCTAGAACATTCTAATCGTACTAGCAGTTGTGCTCAAGCCCTAACACATGCAATGAGTCAGGGTACTCCGCTCGCTTCACCAGAATATATTAGTGAACATGATCACCATGTCAATTCCAGTATGTGGATGTCAGACTCAAACTGTGAAGAAAGCAATCACTTTCAAGAATTTCAACTGCTGAGAGAACCTTATGAATCTGGTTTTCATCAGTTGGATTAA 1374 0.3886 MELNAKSPSSQWECDNNLTFFNIKAIENPKLQPLNQSIELDRENNVGLFDTSTPGRSGCSGSELIHDSTSRCSKSVSIGSSWNWDKGNSKTCVFAFENSHDSNDKMELSKEDSIENSNAPGVSLVSGEPLLTLKLGKRMYFESSNALESDPKNLSIFGDSMSTLSIGKKCKSDGRNLQCWRCQVEGCGLDLSSAKDYYRKHKVCESHSKSPKVVIAGLERRFCQQCSRFHALFEFDEKKRSCRRRLSHHNAKRRKPRPSDVVQSSQSALSSSRCDDELQMSPFSYSKTATNLAMQNIDNNNMLLQTKDFLLKPANDNIDTPSTVTMLSDDSNVNFTSKVIATKSINPGVEDFITFSDTNATQDFTCALSLLSTNPWDSYATESISLEHSNRTSSCAQALTHAMSQGTPLASPEYISEHDHHVNSSMWMSDSNCEESNHFQEFQLLREPYESGFHQLD 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05548 457 Gene3D - 173 243 IPR036893 GO:0003677|GO:0005634
Vivi5g05548 457 MobiDBLite consensus disorder prediction 260 275 - -
Vivi5g05548 457 FunFam Squamosa promoter-binding-like protein 14 173 243 - -
Vivi5g05548 457 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 70 392 IPR044817 GO:0003677
Vivi5g05548 457 Pfam SBP domain 182 255 IPR004333 GO:0003677
Vivi5g05548 457 SUPERFAMILY SBT domain 180 260 IPR036893 GO:0003677|GO:0005634
Vivi5g05548 457 MobiDBLite consensus disorder prediction 245 275 - -
Vivi5g05548 457 ProSiteProfiles Zinc finger SBP-type profile. 179 256 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05548 Vivi-Chr5 158448181 158451555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05548 1 259 SBP-box Gene Family AT5G43270 45.769 1.67e-50 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi5g05548 SBP 2.2e-30 No_clan