Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05541 ATGGAAATCGTTCGACCCCATAGTCATCGGAACTTGTTTTCCAGTAACGACGCCGCATCTGCTCCAACTATTCCCCTCTATCGCTCTGCTCCGCCACTCGAAGTCAGACTCGAAGATTTCGAGTCTTTCGCCATCGATCGTCTCCGAGTTCTGAAGGGAATTTCTGATGGTTTGTCACGGGGAAAGAAACCAGATGAAATGGAAAAATTGGTAAACGAACTGTGGAAAGCGAACATGAGACATCAGCATGCTTCTGAGGTTTTGAACAAGGATATAATATCTCATTTTGTTTTACGTTTAGTGTATTGCAGAACGGAGGACTTGAGGAAATGGTTTCTCTCTATGGAATGTGCACTCTTTCGCTACCGTTTTCGTTTTCTAACTACTGAAGCTCAGAGGGCAATCATGGACGAGTTTGACATAACTTGCAAGGCTGTTAACGGTATGGAATTTGAGAGCATTAAAGAGAAATTGGGACAAGTTGCTCGTTCCATGGGTCAGCCTTTACCCACAGGCGATGCAATCTTTTACAAGGTACCATTTGAAGATGTTCCAGAACTTGTAGCTGGGCGTAGAGTGTTGTTAAGTCAAGGATATGCTTATGTTGCAATGAATCAGGTTGTTTCACTTGTAGCCACTCTATTCCGCAGTCAGCTGTCAAAGACACTCATCCTTACAAACAGAAAATGGACATCTTCAATCAGAGACCAGGAGAAGCATAGGTTGACTCCGATTGTGGAAGCCTTGAGCTCAAGTTATCTAGGTCCTGATTTTTCACAGCCTAGGGAATATGCTGAGATATCTTTAAAGGACATTGATCAACTTGCCAAGACCTCATTTCCTTTGTGCATGCGTCACCAGTTTGACAAGCTGAAAGAGGACCATCATTTAAAACACGGTGGGAGGATGCAACTGGGCCTCTTTCTCAAGGGTGTTGGTTTGAACCTGGAAGATGCACTTGCATTTTGGAGAGCTGAGTTCTCTAAGAAGGTTGGTTTGGAGAAGTTTGAGAAAGAATATTCATATACCATTCGCCATAATTATGGAAAGGAAGGGAAGAGAACTGATTATACTCCCTATTCTTGTTCTAAAATTATTTCGTCAACTCCCGGTGCTGGAGATCATCATGGTTGCCCCTATCGACACTTCAGTGAAGAGAATCTAAGAGCTGCTCTCAGCAGAATGGGGGTGAACAGTCGAGCAATGGAAGATGTCATGAACAAAGTGCGAAATAGACATTATCAGCTAGCATGTACCTTGACATTTGAAGCTCTTCATGGCGTGCCATGTGATGCTGGGATTAACCATCCAAATCAATATTTCAGTGACAGTCAAAAGATATTGCGCCCAAAGAAGGACACTTCAACCTAA 1371 0.4325 MEIVRPHSHRNLFSSNDAASAPTIPLYRSAPPLEVRLEDFESFAIDRLRVLKGISDGLSRGKKPDEMEKLVNELWKANMRHQHASEVLNKDIISHFVLRLVYCRTEDLRKWFLSMECALFRYRFRFLTTEAQRAIMDEFDITCKAVNGMEFESIKEKLGQVARSMGQPLPTGDAIFYKVPFEDVPELVAGRRVLLSQGYAYVAMNQVVSLVATLFRSQLSKTLILTNRKWTSSIRDQEKHRLTPIVEALSSSYLGPDFSQPREYAEISLKDIDQLAKTSFPLCMRHQFDKLKEDHHLKHGGRMQLGLFLKGVGLNLEDALAFWRAEFSKKVGLEKFEKEYSYTIRHNYGKEGKRTDYTPYSCSKIISSTPGAGDHHGCPYRHFSEENLRAALSRMGVNSRAMEDVMNKVRNRHYQLACTLTFEALHGVPCDAGINHPNQYFSDSQKILRPKKDTST 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05541 456 PIRSF DNA_primase_large 2 456 IPR016558 -
Vivi5g05541 456 PANTHER DNA PRIMASE LARGE SUBUNIT 18 451 IPR007238 GO:0006269
Vivi5g05541 456 CDD PriL_PriS_Eukaryotic 26 444 IPR016558 -
Vivi5g05541 456 Pfam Eukaryotic and archaeal DNA primase, large subunit 176 441 IPR007238 GO:0006269
Vivi5g05541 456 Gene3D - 5 249 - -
Vivi5g05541 456 FunFam DNA primase large subunit 6 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05541 Vivi-Chr5 158379277 158386352 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05541 1 451 Core DNA Replication Machinery Family AT1G67320 66.530 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05541 K02685 - gmx:100806321 815.068