Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05530 ATGGAAGAGGATTTCGATTTTCCAGCATCAGGCGAAATGGAAATGCCGGAGGAAGAAGAGGTGGTGAGTCCGATCCACAAGGTCGGTGAAGAGAAGGAAATTGGGAGGAGCGGTTTGAAGAAGAAGCTTGTTAAGGAAGGAGAAGGATGGGAATCTCCGAGTGATGGAGATCAAGTTGAAGTGCATTATACCGGAACGTTGCTTGATGGAACTAAGTTTGATTCGAGCCGCGATAGGGGTACTACTTTCAAGTTTAAGCTCGGTCAAGGCCAAGTGATCAAGGGGTGGGATGAAGGTATCAAAACTATGAAGAAGGGTGAAAATGCTATATTCACAATACCTTCAGAGTTGGCTTATGGTGAGTCTGGGTCGCCTCCTACTATTCCTCCGAAGGCGACTCTTCGGTTTGATGTGGAGTTACTGTCTTGGACGAGTGTCAAGGACATTACTAAGGATGGTGGGATATTGAAGAACATAATAATTGAAGGAGAGAAATGGGAAAATCCTAAGGATCTTGATGAAGTATTCGTTAAATATGAAGCTCGTCTTGAAGATGGGACGATTATTTCAAAATCTGATGGAGTGGAGTTTACTGTTCAAGAGGGTTATTTCTGTCCTGCTTTGGCAAAGGCTGTGAAAACAATGAAGAAGGGAGAGAAAGTTCTCTTGAATGTTAAGCCAGAATATGCATTTGGGGAGAGTGGAAAACCTGCATCAGGAGATGATGGCGCTGTACCTCCAAATGCTTCACTTCAAATAGATTTAGAGTTAGTCTCGTGGAAGACCATATCTGACATTACTAAGGACGGGAAGGTCCTTAAGAAGATCTTGAAGGAAGGAGAGGGGTATGAAAGGCCAAATGATGGAGCTGTGGTTCAAGTGAAACTTATTGGCAAGCTACAAGATGGAACTATCTTTCTTAAGAAGGGTCATGATGATGATCAGCCATTTGAGTTCAAAATTGATGAAGAGCAAGTAATTCTTGGACTTGATAGAGCTGTGAAGAATATGAAGCAAGGGGAAGTTGCATTGGTGGTCATACAGCCCGAGTATGCTTTTGGTTCATCTGCCTCCCCTCAGGAATTGGCTACTGTTCCTCCTAATTCCACCGTTTACTATGCAGTTGAGCTGGTTTCCTTTGTAAAGGAAAAGGAATCATGGGATATGACTACGCAAGAGAAGATTGAGGCAGCTGGAAAGAAAAAGGAAGAAGGTAATGCATTGTTCAAAGCTGGTAAACATGAAAGAGCATCAAAGAGATACGAAAAGGCCATGAAGTATATTGAGTACGATTCCACCTTTAGTGATGAGGAGAAACAGCAGACCAAAACATTGAAAATTACGTGCAATCTTAACAATGCAGCATGCAAGCTGAAACTCAAGGACTACAAACAGACAGAGAAGTTGTGCACAAAGGTGTTAGAGCTTGATAGTAGGAATGTAAAAGCACTATACCGTAGGGCACAAGCATATATTCATCTTGTAGACTTGGATTTGGCTGAAATGGATATTAAGAAAGCCCTTGAAATTGATCCAGATAACAGGGATGTGAAGATTGAGTACAAAAGATTGAAGGACAAAGTGAGAGAATACAACAAGAAGGATGCACAGTTTTATGGAAATATATTTGCAAAAATGAATAAAGTGGAACAAGCAAAAACTGCTGCAGCAAAGCAGGAATCTGTGGCTATGGCTGTGGATAGTAAAGCTTAA 1713 0.4168 MEEDFDFPASGEMEMPEEEEVVSPIHKVGEEKEIGRSGLKKKLVKEGEGWESPSDGDQVEVHYTGTLLDGTKFDSSRDRGTTFKFKLGQGQVIKGWDEGIKTMKKGENAIFTIPSELAYGESGSPPTIPPKATLRFDVELLSWTSVKDITKDGGILKNIIIEGEKWENPKDLDEVFVKYEARLEDGTIISKSDGVEFTVQEGYFCPALAKAVKTMKKGEKVLLNVKPEYAFGESGKPASGDDGAVPPNASLQIDLELVSWKTISDITKDGKVLKKILKEGEGYERPNDGAVVQVKLIGKLQDGTIFLKKGHDDDQPFEFKIDEEQVILGLDRAVKNMKQGEVALVVIQPEYAFGSSASPQELATVPPNSTVYYAVELVSFVKEKESWDMTTQEKIEAAGKKKEEGNALFKAGKHERASKRYEKAMKYIEYDSTFSDEEKQQTKTLKITCNLNNAACKLKLKDYKQTEKLCTKVLELDSRNVKALYRRAQAYIHLVDLDLAEMDIKKALEIDPDNRDVKIEYKRLKDKVREYNKKDAQFYGNIFAKMNKVEQAKTAAAKQESVAMAVDSKA 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05530 570 Gene3D - 147 261 IPR046357 GO:0003755
Vivi5g05530 570 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 144 IPR001179 GO:0003755
Vivi5g05530 570 PANTHER PEPTIDYLPROLYL ISOMERASE 18 144 - -
Vivi5g05530 570 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 172 261 IPR001179 GO:0003755
Vivi5g05530 570 Gene3D Tetratricopeptide repeat domain 384 541 IPR011990 GO:0005515
Vivi5g05530 570 MobiDBLite consensus disorder prediction 1 29 - -
Vivi5g05530 570 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 289 381 IPR001179 GO:0003755
Vivi5g05530 570 Coils Coil 514 534 - -
Vivi5g05530 570 SUPERFAMILY FKBP-like 146 262 - -
Vivi5g05530 570 Pfam Tetratricopeptide repeat 482 514 IPR019734 GO:0005515
Vivi5g05530 570 SUPERFAMILY FKBP-like 32 148 - -
Vivi5g05530 570 SUPERFAMILY TPR-like 386 547 IPR011990 GO:0005515
Vivi5g05530 570 FunFam Peptidylprolyl isomerase 148 261 - -
Vivi5g05530 570 FunFam Peptidylprolyl isomerase 29 147 - -
Vivi5g05530 570 FunFam Peptidylprolyl isomerase 386 541 - -
Vivi5g05530 570 SMART tpr_5 398 431 IPR019734 GO:0005515
Vivi5g05530 570 SMART tpr_5 481 514 IPR019734 GO:0005515
Vivi5g05530 570 SMART tpr_5 447 480 IPR019734 GO:0005515
Vivi5g05530 570 Gene3D - 262 383 IPR046357 GO:0003755
Vivi5g05530 570 MobiDBLite consensus disorder prediction 1 18 - -
Vivi5g05530 570 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 378 IPR001179 GO:0003755
Vivi5g05530 570 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 141 IPR001179 GO:0003755
Vivi5g05530 570 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 167 258 IPR001179 GO:0003755
Vivi5g05530 570 SUPERFAMILY FKBP-like 263 398 - -
Vivi5g05530 570 Gene3D - 29 146 IPR046357 GO:0003755
Vivi5g05530 570 ProSiteProfiles TPR repeat profile. 481 514 IPR019734 GO:0005515
Vivi5g05530 570 FunFam Peptidylprolyl isomerase 262 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05530 Vivi-Chr5 158275232 158278365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05530 1 570 Calmodulin-binding Proteins AT5G48570 73.024 0.0 852