Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05529 ATGCAATCTCTCAAGTTACGCTCTCTTCTTTTTTATCCTCCTTTCTCTTCTAGCTTACTTCAATCCTTTCTCCTTTCATTTTCTACTGCTTCTTCGTCATCCCCAAAAACCCAATACTCAAAAGAAGCCACTTCTCTATTTGACTTCCTTAACTCCAGCTTCAAATTATCTAAATCTCAATCCATTTTTATCTCTAAACGACTTTCACGAACCACCCTCCCTCAAAACCCCATGTCTGTGATCAACTTTTTCAAACAAATTGGGTTTTCTCAAACTCAGATTCAAACCATCATTCGTCAGAGAAGTCAAGTACTGTTTTCAGATGTTGATAAAACTCTCAGACCTAAAGTTGATCTCTTTCAACAATTGGGTTTTCAGGGTTCTGATTTAAGCGGCTTTATTTCTATGTATCCAACCCTTTTGACTGCTAGTTTGAAAAAACAGTTGGTTCCCTCGGTGGAAGCTGTTAAGAAAATTGTACACAATGAGAAAGATCTTATTCAAGTTTTGTACAAATGTGGTCGGTTACTCCCAATGTACCAACTATTTGTTTCCAACATTGCTTTCTTAGAGAGCTGTGGCATTGTTGGGGACCAGGTTTTGATTCTACTCAAACGACAATCGAGACTTTTGAGTTTACCACAATCTGCTGTTAGAAACCATGTTTTGCAAGCTGTAGAATTGGGATTCCATCAAAATTCAAGAATGTTGATTCACGGGCTTCATACGATAAGCAGTTTGAGCCATAAAACATTTGAGAGAAAGTTGGATTTAATTCAGAGTTTTGGGTTTTCTAAAGATGAGACCTTGCAAATGTTCAAAAAGGCTCCAACTTTGCTTAGGGTATCGGACAAAAAATTAAAGGCTGGAATTGAATTCTTCTTACATACAGTTATGCTGCCAAAGTCCGTACTGGCTAACCGGCCCATGATTTTGATGTATAGCATTGAGGATCGAGTGTTTCCTCGATATAGAGTTTTTCAGCTTTTGAAATCACAAAATCTTTGTAAGGTTCCCAGTTTTGTTTATGTGTTATGCTTGCCCGAGGAGATGTTCTTGAACAAGTATATATCAAAGTTTAAAGAAAATACCGAGGCATTATTAATAGCTTACAAGGGGCATCATATAGCTGGTGGCACGATGTAA 1146 0.3752 MQSLKLRSLLFYPPFSSSLLQSFLLSFSTASSSSPKTQYSKEATSLFDFLNSSFKLSKSQSIFISKRLSRTTLPQNPMSVINFFKQIGFSQTQIQTIIRQRSQVLFSDVDKTLRPKVDLFQQLGFQGSDLSGFISMYPTLLTASLKKQLVPSVEAVKKIVHNEKDLIQVLYKCGRLLPMYQLFVSNIAFLESCGIVGDQVLILLKRQSRLLSLPQSAVRNHVLQAVELGFHQNSRMLIHGLHTISSLSHKTFERKLDLIQSFGFSKDETLQMFKKAPTLLRVSDKKLKAGIEFFLHTVMLPKSVLANRPMILMYSIEDRVFPRYRVFQLLKSQNLCKVPSFVYVLCLPEEMFLNKYISKFKENTEALLIAYKGHHIAGGTM 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05529 381 PANTHER CGI-12 PROTEIN-RELATED 43 360 IPR003690 GO:0003690|GO:0006355
Vivi5g05529 381 FunFam Mitochondrial transcription termination factor-like 145 364 - -
Vivi5g05529 381 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Vivi5g05529 381 SMART mt_12 235 265 IPR003690 GO:0003690|GO:0006355
Vivi5g05529 381 SMART mt_12 54 90 IPR003690 GO:0003690|GO:0006355
Vivi5g05529 381 SMART mt_12 302 333 IPR003690 GO:0003690|GO:0006355
Vivi5g05529 381 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Vivi5g05529 381 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Vivi5g05529 381 Gene3D Transcription termination factor 3, mitochondrial 182 365 IPR038538 -
Vivi5g05529 381 Gene3D Transcription termination factor 3, mitochondrial 38 181 IPR038538 -
Vivi5g05529 381 Pfam mTERF 245 352 IPR003690 GO:0003690|GO:0006355
Vivi5g05529 381 Pfam mTERF 81 173 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05529 Vivi-Chr5 158268989 158271471 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi5g05529 mTERF 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05529 K15031 - qsa:O6P43_021347 320.087