Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05528 ATGCATAACCAAGATCAAAGAAAAACTCACACTCCAGGGCACGAGAATCATGGAGTTTATGTGTGTCACAAATGTGGATGGCCGTTTCCGAATCCACATCCCAGTGCTAAACATAGACGCGCTCACAAGAAGATCTGCGGAACTGTTGAAGGTTACAAACGGAAACAAAACGGTTCGGATGATGAACGTGTTTCGGATGACGATTACAAAACTCCGGGTTTGGTTCTGTCTAGTGGCAATAATGAGAAGGGTAATGTTGGAATTAAAGGGAAGTTTACTAGGGTTGAAAGTGATGTGTTTTCAGATGCAGTTGCTGATTTTCCAGATACTGGAGTTAAGGATCATTTTCCACAAACCCTGAAAGGGTCTTCTGGGAACAATGATTTTAATGCTACCGATGTGACTCCACTGGTTGCCAACTCAAGCAATGAGTTCCAAATTAAGAGTTCTGAAATTCCACAAAATGAAAGTTTTGAAGTGGAAAATATAGTCGAGTCGCAAGGTCAATTATCAGGCTCTAGTGTGGATCCATTAATAAGCTCAGTTGCAGATTCAAAGACTGAAGAATTAAGTATTGTGCATGGTGATGGTTTTTCTGGTCTGTCAAGTGAGTCAAGTCTCAGCAAAGCTGCAGCTGTATGTGATACTTTGCCAGAAAAAAATATCTATACTGGTGAAGATGTAACAGGTTCTGGTTTAACACATGGTGAAAAGGAGTCTAATTTGAAAGGAAAGGATGAGGTAAAATCAGAAAGAGACGTGGTTGAAATTGTGGAATCAACTAATAACATTGATGGTGATGGAGCTGTTAATCCAAATGAAAAGAAGGGATCCGAGTTCGTTTCTTTGCAGCCTCAATATGAACTTCCACTAGAAGTAAACTCGTCTATTATCAACAAAGAGACGCCGGTAGAATCTGCACATGCAATAGAGTCCAATAACAGTAGTGAAGTCAAGGTTTTGCAGGAAAAGGAAGACGTGAATGTTAGTAGTGATCCACTTCCTGTGCACGATGATACACTTGGTGTAGCTTATCCTCACAGTGAGTCATTGAAACATGAGGAAGATGTTAGCAAGGAAAGTAATTTTCATTTCAACACAAGCCAATCAAGGGAAAGAAGCGGTGTTCTCTCTGAAGACACACATGCTGAGCATTGCTCTGAATTTTCTTTAGGCGAGCTTGCAACTGAAACTTATCAAAGATCACATGAAATTGGAGTGTCTATGAAAACTGAGACGAGTGAGAATGATTTTTCTGAAGAGCACGGACCTGATGACGTTCATGAAAATTCTCAACTCAAAAGTAGTTTATTGGTTTCATCAAATGAATATCAAAGGGAGGCATCCTTTCAGTCCGCGACCGATGAAACATTTGACATCATCAATGTTAGTCATCGTTCGAATGACACAACTGAAATAAATGATGTATCTGTAGATGGAAAGGTTGCAGGAGCTAATGTGGAAAACGACACTGAAGTTCTATTGAATGATTATCAACCTAGGGACCTCTTGCAATCTGAAGTTGAGGAATCAAGTGTCTTATATAAGAATAATGGCGATGATGCTGGTGAAACGGGTAAAATTGAAGAATGTGATAGAACTGAAGAGGAAATCAATAGCAATATCAAATTATATGAAGAATATAACAAACCCACTGGTGTTGCTGTTGACTCACATGTAGAACAAGCTACACATCTATTAGTGGAGACTGCAGAGGACTTTTCCATCAAGCATACGCCACATTCTTCAACCAATACCAAGCCTTCTGCTCAACATGATTCCGCCGTTGAAGATGATTCAAACGGAGAGCCTGTTCAAGATCAAGGAATTGATACTTCTGCTGACTCGCATGTAGCTACAGAAGACCTTACCAGCAAGTATACAGCACATTCTTCTATAAATACTAAGTTTTCTGCTCAACATGTTTCTGCTGTTGAAGAGAATTCAGGGGGAGAAGGGTCTATAATTACTGCTGCGGCACTTTCAGTTCAAGATCAAAGTGTCGCTAACTTGATTAAACTAACTTCTCCCGGAACGGATGCTTCAGTTGACTCCAGTAGCCGGCGTGAAAGTTTGGAAGGGAACTGGGGCTCTAGTTCAGTTATCTCAATGATATCTGATGCACCAACTGTTATTGAGGCCGAAACTTTACCTCCAATTGGTTCGCTGGCTGCATCAGAAGAAGGCAAATCTGACTTGAACACCTTACAGGCTGCACCTGCTGATAGACAGCTATCTGGAAAATCAGCAACATTTGAACTGCCATCTTTCACAACATTGGTTGAGCCTAACCATGCGGCTGCTAGTCCTGAAGGTGCTGCTTCTGAAATCCCGAATCCTCAACCGTTAAGTTCCACCTTGCCAGCCGGTTGGTTTCCAACTCTAAATCAGGTTATCAATGATTCTGAAGGGAGAAAGAAGAATGAAGAAACAATTGCCAAAATAACAAACCGGAGCAGCAGTAATAAAGAGCACACACCTCTGAAGAGTCTCTTGGACGAGGTTACTCATAGCAGCAAAAAGCCGAAATCGCCAAAAGTTGAAGAAACTAATAATGTGTCTGGATTGACAACTGTTAACTCAATTCTTGGTCCCGAGTCCCCTTCGGCGGCCCAAGTGGCGAAAGAAAAGGCTGCAGATGAATGGAACTCTCCAGCAAGATATCCTGCAAATATCAAGAGAGAGAAAAAGAAATTGAAGAGCAGACCATTGTGGTTACAGTTTGTTTGTTGCTCAACAGCAGTGGATCATCCTCAACGAAGGTAG 2766 0.4132 MHNQDQRKTHTPGHENHGVYVCHKCGWPFPNPHPSAKHRRAHKKICGTVEGYKRKQNGSDDERVSDDDYKTPGLVLSSGNNEKGNVGIKGKFTRVESDVFSDAVADFPDTGVKDHFPQTLKGSSGNNDFNATDVTPLVANSSNEFQIKSSEIPQNESFEVENIVESQGQLSGSSVDPLISSVADSKTEELSIVHGDGFSGLSSESSLSKAAAVCDTLPEKNIYTGEDVTGSGLTHGEKESNLKGKDEVKSERDVVEIVESTNNIDGDGAVNPNEKKGSEFVSLQPQYELPLEVNSSIINKETPVESAHAIESNNSSEVKVLQEKEDVNVSSDPLPVHDDTLGVAYPHSESLKHEEDVSKESNFHFNTSQSRERSGVLSEDTHAEHCSEFSLGELATETYQRSHEIGVSMKTETSENDFSEEHGPDDVHENSQLKSSLLVSSNEYQREASFQSATDETFDIINVSHRSNDTTEINDVSVDGKVAGANVENDTEVLLNDYQPRDLLQSEVEESSVLYKNNGDDAGETGKIEECDRTEEEINSNIKLYEEYNKPTGVAVDSHVEQATHLLVETAEDFSIKHTPHSSTNTKPSAQHDSAVEDDSNGEPVQDQGIDTSADSHVATEDLTSKYTAHSSINTKFSAQHVSAVEENSGGEGSIITAAALSVQDQSVANLIKLTSPGTDASVDSSSRRESLEGNWGSSSVISMISDAPTVIEAETLPPIGSLAASEEGKSDLNTLQAAPADRQLSGKSATFELPSFTTLVEPNHAAASPEGAASEIPNPQPLSSTLPAGWFPTLNQVINDSEGRKKNEETIAKITNRSSSNKEHTPLKSLLDEVTHSSKKPKSPKVEETNNVSGLTTVNSILGPESPSAAQVAKEKAADEWNSPARYPANIKREKKKLKSRPLWLQFVCCSTAVDHPQRR 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05528 921 MobiDBLite consensus disorder prediction 53 69 - -
Vivi5g05528 921 MobiDBLite consensus disorder prediction 827 847 - -
Vivi5g05528 921 MobiDBLite consensus disorder prediction 409 429 - -
Vivi5g05528 921 MobiDBLite consensus disorder prediction 814 882 - -
Vivi5g05528 921 MobiDBLite consensus disorder prediction 409 431 - -
Vivi5g05528 921 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
Vivi5g05528 921 MobiDBLite consensus disorder prediction 848 867 - -
Vivi5g05528 921 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 912 - -
Vivi5g05528 921 MobiDBLite consensus disorder prediction 322 381 - -
Vivi5g05528 921 MobiDBLite consensus disorder prediction 226 251 - -
Vivi5g05528 921 MobiDBLite consensus disorder prediction 575 617 - -
Vivi5g05528 921 MobiDBLite consensus disorder prediction 765 789 - -
Vivi5g05528 921 MobiDBLite consensus disorder prediction 53 82 - -
Vivi5g05528 921 MobiDBLite consensus disorder prediction 577 591 - -
Vivi5g05528 921 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 42 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05528 Vivi-Chr5 158261951 158266267 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi5g05528 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05528 - - psat:127101544 1530