Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05520 ATGGAAATTGTTCGACCTCATAGTCACAGAAACTTGTTTTCCAGTAACGACGCCGCATCTGCTCCAACTATTCCCCTCTATCGCTCTGCTCCGCCACTCGAAGTCAGACTCGAAGATTTTGAGTCTTTCGCCATCGATCGCCTCCGAGTTCTGAAGGGAATTTCTGATGGTTTGTCACGGGGAAAGAAACCAGATGAAATGGAAAAATTGGTAAACGAACTGTGGAAAGCGAACATGAGACATCAGCATGCTTCTGAGGTTTTGAACAAGGATATAATATCTCATTTTGTTTTACGTTTAGTGTATTGCAGAACGGAGGACTTGAGGAAATGGTTTCTTTCTATGGAATGTGCACTTTTTCGCTACCGTTTTCGTTTTCTAACTACCGAAGCTCAGAGGGCAATCATGGACGAATTTGACATAACTTGCAAGGCTGTTAACGGTATGGAGTTTGAGAGCATTAAAGAGAAATTGGGACAAGTTGCACGTTCCATGGGTCAGCCTTTACCCACAGGCGATGCAATCTTTTACAAGGTACCATTTGAAGATGTTCCAGAACTTGTAGCTGGGCGTAGAGTGTTGTTAAGTCAAGGACATGCTTATGTTGCAATGAATCAGGTTGTTTCACTTGTAGCCACTCTATTCCGCAGTCAGCTGTCAAAGACACTCATCCTTACAAACAGAAAATGGACATCTTCAATCAGAGACCAGGAGAAGCATAGGTTGACTCCGATTGTGGAAGCCTTGAGCTCAAGTTATCTAGGTCCTGATTTTTCACAGCCTAGGGAATATGCTGAGATATCTTTAAAGGACATTGATCAACTTGCCAAGACCTCATTTCCTTTGTGCATGCGTCACCAGTTTGACAAGCTGAAAGAGGACCATCATTTAAAACACGGTGGGAGGATGCAACTGGGCCTCTTTCTCAAGGGTGTTGGTTTGAACCTGGAAGATGCACTTGCATTTTGGAGAGCTGAGTTCTCTAAGAAGGTTGGTTTGGAGAAGTTTGAGAAAGAATATTCATATACCATTCGCCATAATTATGGAAAGGAAGGGAAGAGAACTGATTATACTCCCTATTCTTGTTCTAAAATTATTTCGTCAACTCCCGGTGCTGGAGATCATCATGGTTGCCCCTATCGACACTTCAGTGAAGAGAATCTAAGAGCTGCTCTCAGCAGAATGGGGGTGAACAGTCGAGCAATGGAAGATGTCATGAACAAAGTGCGAAATAGACATTATCAGCTAGCATGTACCTTGACATTTGAAGCTCTTCATGGCGTGTCATGTGATGCTGGGATTAACCATCCAAATCAATATTTCAGTGACAGTCAAAAGATATTGCGCCCTAAGAAGGACACTTCAACCTAA 1371 0.4296 MEIVRPHSHRNLFSSNDAASAPTIPLYRSAPPLEVRLEDFESFAIDRLRVLKGISDGLSRGKKPDEMEKLVNELWKANMRHQHASEVLNKDIISHFVLRLVYCRTEDLRKWFLSMECALFRYRFRFLTTEAQRAIMDEFDITCKAVNGMEFESIKEKLGQVARSMGQPLPTGDAIFYKVPFEDVPELVAGRRVLLSQGHAYVAMNQVVSLVATLFRSQLSKTLILTNRKWTSSIRDQEKHRLTPIVEALSSSYLGPDFSQPREYAEISLKDIDQLAKTSFPLCMRHQFDKLKEDHHLKHGGRMQLGLFLKGVGLNLEDALAFWRAEFSKKVGLEKFEKEYSYTIRHNYGKEGKRTDYTPYSCSKIISSTPGAGDHHGCPYRHFSEENLRAALSRMGVNSRAMEDVMNKVRNRHYQLACTLTFEALHGVSCDAGINHPNQYFSDSQKILRPKKDTST 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05520 456 PANTHER DNA PRIMASE LARGE SUBUNIT 18 451 IPR007238 GO:0006269
Vivi5g05520 456 CDD PriL_PriS_Eukaryotic 26 444 IPR016558 -
Vivi5g05520 456 Gene3D - 5 249 - -
Vivi5g05520 456 PIRSF DNA_primase_large 2 456 IPR016558 -
Vivi5g05520 456 FunFam DNA primase large subunit 6 249 - -
Vivi5g05520 456 Pfam Eukaryotic and archaeal DNA primase, large subunit 176 441 IPR007238 GO:0006269
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05520 Vivi-Chr5 158165836 158173635 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05520 1 451 Core DNA Replication Machinery Family AT1G67320 66.735 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05520 K02685 - gmx:100806321 810.061