Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05506 ATGCAATCTCTCAAGATACGCTCTCTTCTCTTTTATCCTCCTTTCTCTTCCAACTCACTTCAATCCTTTCTCCTTTCATTTTCAACGGCTTCTTCATCATCCCCAAAAACCCAATACTCAAAAGAAGCCACTTCTCTATTTGACTTCCTTAATTCAAACTTCAAATTATCTAAATCTCAATCCATTTTTATCTCTAAACGTCTTTCACGAACCACCCTCCCTCAAAACCCCATGTCTGTGATCAACTTTTTCAAACAAACTGGGTTTACTCAAACTCAGATTCAAACCATCATTCGTCAGAGAAGTCAAGTACTGTTTTCAGATGTTGATAAAACTCTCAGACCTAAAGTTGATCTCTTTCAACAATTGGGTTTTCAGGGTTCTGATTTAAGCGGCTTTATTTCTATGTATCCAACCCTTTTGACTGCTAGTTTGAAAAAACAGTTGGTTCCCTCGGTGGAAGCTGTTAAGAAAATTGTACACAATGAGAAAGATCTTATTCAAGTTTTGTACAAATGTGGTCGGTTACTTCCAATGTACCAACTATTTGTTTCCAACATCGCTTTCTTAGAGAGTTGTGGTATTGTTGGGGACCAGGTTTTGATTCTACTCAAACGACAATCGAGACTTTTGAGTTTACCACAATCTGCTGTTAGAAACCATGTTTTGCAAGCTGTAGAATTGGGCTTCCATCAAAATTCAAGAATGTTGATTCACGGGCTTCATACGATAAGCAGTTTGAGCCATAAAACATTTGAGAGAAAGTTGGATTTAATTCAGAGTTTTGGGTTTTCTAAAGATGAGACCTTGCAAATGTTCAAAAAGGCTCCAACTTTGCTTAGGGTATCAGGCAAAAAATTAGAGGCTGGAATTGAATTCTTCTTACATACAGTTATGCTGCCAAAGTCCGTACTGGCTAACCGGCCCATGATTTTGATGTATAGCATTGAGGATCGAGTGTTTCCTCGATATAGAGTTTTTCAGCTTTTGAAATCACAAAATCTTTGTAAGGTTCCCAGTTTTGTTTATGTGTTATGCTTGCCCGAGGAGATGTTCTTGAACAAGTATATATCAAAGTTTAAAGAAAATACCGAGGCATTATTAATAGCTTACAAGGGGCATCATATAGCTGGTGGCACGATGTAA 1146 0.3752 MQSLKIRSLLFYPPFSSNSLQSFLLSFSTASSSSPKTQYSKEATSLFDFLNSNFKLSKSQSIFISKRLSRTTLPQNPMSVINFFKQTGFTQTQIQTIIRQRSQVLFSDVDKTLRPKVDLFQQLGFQGSDLSGFISMYPTLLTASLKKQLVPSVEAVKKIVHNEKDLIQVLYKCGRLLPMYQLFVSNIAFLESCGIVGDQVLILLKRQSRLLSLPQSAVRNHVLQAVELGFHQNSRMLIHGLHTISSLSHKTFERKLDLIQSFGFSKDETLQMFKKAPTLLRVSGKKLEAGIEFFLHTVMLPKSVLANRPMILMYSIEDRVFPRYRVFQLLKSQNLCKVPSFVYVLCLPEEMFLNKYISKFKENTEALLIAYKGHHIAGGTM 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05506 381 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Vivi5g05506 381 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Vivi5g05506 381 SMART mt_12 235 265 IPR003690 GO:0003690|GO:0006355
Vivi5g05506 381 SMART mt_12 302 333 IPR003690 GO:0003690|GO:0006355
Vivi5g05506 381 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Vivi5g05506 381 Pfam mTERF 81 173 IPR003690 GO:0003690|GO:0006355
Vivi5g05506 381 Pfam mTERF 245 352 IPR003690 GO:0003690|GO:0006355
Vivi5g05506 381 Gene3D Transcription termination factor 3, mitochondrial 38 181 IPR038538 -
Vivi5g05506 381 Gene3D Transcription termination factor 3, mitochondrial 182 365 IPR038538 -
Vivi5g05506 381 PANTHER CGI-12 PROTEIN-RELATED 44 360 IPR003690 GO:0003690|GO:0006355
Vivi5g05506 381 FunFam Mitochondrial transcription termination factor-like 145 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05506 Vivi-Chr5 158064620 158067209 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi5g05506 mTERF 5.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05506 K15031 - cave:132165962 304.679