Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05494 ATGCTCAAATTCTCATTCCTCATTGCCCTCGTCATCATCGCCACCACCATCGTCGCCGATGACGACGCCGTCATGAAAAGCTTCCTCCAAAACGTTAAACCTCTCCCCGCCAAATGGTCTCCCAATACTCCCTTCTGTCAATGGACCGGCATCGCATGCGATACGTCAAACCGCGTCACTGAAATACGGCTCTCCTCGTTAAACCTCGCCGGAACCCTTCCCGACGATCTCAACTCCCTCACTGAACTCACATCTCTCGATCTCAGAAACAACTCTCTCTCCGGCTCATTCCCTTCCCTCGCCAACCTGTCCTCTCTCAAAACCGCGTACCTCGGGACTAACAAATTCACCTCCGTCTCTTCCGCCGCGTTTTCCGGCCTCACTTCGCTTCAGGAGCTTTACTTCGATCATAACTCTGACCTCTCTCAATGGGAATTCCCCAGCGAGTTGACTCAGTCTTCTAGTCTCAACACACTCGATCTTACTTCCGCAATGATCACCGGAAATTTACCCGACATTTTCGGTAATTTGCCTAGTCTCACCATTGTTCGACTCTCCTTCAACAATTTATCCGGTGGATTACCTAACTCTCTCGCCGCTTCCTCAATCCAGAATCTATGGCTCAATAACCAGCAATCCGGGCCCGGGTTTACCGGTTCGATCGCCGTGATTTCTAAAATGACTTATTTAACTCAGGTATGGCTTCAAAATAATCACTTCACTGGTCCAATTCCAGATTTTTCGCAATGCAAGAATCTCTTTGATCTGCAGCTTAGGGATAATCAGTTTACCGGTGTGGTTCCGGATTCTCTGATGAGTATGTCGAGTTTGAAGAATGTTTCTCTTGGTAACAATGTGCTTCAGGGGCCTGTTCCTGTTTCCTCCAGTGGTGGGACAATTGATGTTAAAGGCCTTAATAGCTTTTGTCTTGATAAGCCTGGGCCTTGTGATGACAGGGTTATGGTTTTGCTTAAAATTGCTGAGGGGTTTGGGTATCCTATTCAATTTGCGAATTCGTGGAAAGGGAATGATCCTTGTCAAGATTGGCAATCTGTTTTGTGTAGTGGGGGTAAGATTACCACACTGAATTTCGGGAAGAGGAATTTACAGGGGACGATTTCGCCTGCTTTTGCCAATTTGACTGATTTGAACAGGTTGATTCTAAGTGGGAATAATTTGACTGGTTCTATACCTCAGAGTTTGACTACATTGACTCAGCTTGAGACACTTGATGTCTCTAACAATAACCTCTCAGGAAAGGTTCCCGAGTTCTCGCCAAAGGTGAAGTTAGTAACTGATGGTAATGTTTTGCTTGGTAAAGATCCTGGTTCGGGAGGTGAAACGCCTGGTTCTTCTCCCGGCGGATCGGGAAAAGGTACTGCGTTGAGTCCGGGTGGGATTGCTGGTATAGTGATTGTTGTTGTGCTTTTTGTTGCTGTTGTATTGTTCGTTTGTTGTAAGTGTTATTCTAGAAAACGGTTTCGAAAATTTTCAAGGGTTAGTAGTCCTGAAAATCGGCAAGGAAATGTTAAACTTGATCTTGCCAGTGTTTCAAATGGATATGGTGGTCTTCCGAGCGAGTCGCATAGCCAGAGTAGTGGTGATCATAGTGATCTTTATGGTTTTGATGGAGGAAGTGGCGGAAATGCTATTATTTCAATTCATGTTCTTCGACAAGTGACAAATGATTTCAGTGATGATAATATTTTGGGCAGGGGAGGGTTTGGTATTGTTTATAAAGGGGAATTGCCTGATGGAACTAAAATTGCTGTCAAGAGGATGATATCTGTTGCAATGGGAAGCAAAGGATTGAATGAGTTCCAAGCAGAGATTTCTGTTCTTACTAAGGTTAGGCATAGACATTTGGTCGCCCTTTTGGGATATTGCATCAATGGCAATGAGAGGCTTTTGGTATATGAGCATATGCCTCAAGGTACATTAACGCAGCATCTGTTTGAATGTGAGGAACATGGTTACACTCCTTTGACATGGAAACAAAGGTTGGCAATAGCTTTGGATGTTGGACGGGGGATCGAATACTTGCACAGCTTAGCTCAACAAAGCTTCATTCATAGAGACTTAAAACCATCAAATATACTATTAGGCAATGACATGAGAGCAAAAGTTGCAGATTTTGGGTTGGTTAAAAACGCACCTGACGGGAATTATTCTCTTGAGACAAGGTTGGCCGGAACATTTGGATATCTTGCACCCGAGTACGCAGCTACCGGAAGAGTGACAACCAAAGTGGACGTTTACGCATTCGGAGTAGTTTTGATGGAACTGATCACAGGTAAAAAGGCATTGGATGATTCTGTGCCTGATGAAAGATCTCATTTGGTTACATGGTTCCGTAGGGTACTCATTAACAAGGAAAACGTTCCAAAGACAATTGATCAAACTCTCAACCCAGATGAGGAAACAATGTTGAGCATATATAAAGTGGCTGAGCTGGCCGGTCATTGCACCGCCCGTGAACCATACCAAAGGCCAGATATGGGGCACGCAGTTAATGTGTTGGTTCCCCTTGTGGAGCAATGGAAACCTTCTATCGATACAGACGAAAGTGGTTATGGCGTTGAGTTGAATCTTCCTCGAGCACTGCAAAGGTGGCAAGACAATGAAGGCACTTCAACATCAATGTTTAATGACTTGTCCATCTCACAAACCCAATCAAGTCTCAATTCTAAGCCTCCATTTGCAGATTCCTTTGGTTCAACGGATTGCCGATAG 2733 0.446 MLKFSFLIALVIIATTIVADDDAVMKSFLQNVKPLPAKWSPNTPFCQWTGIACDTSNRVTEIRLSSLNLAGTLPDDLNSLTELTSLDLRNNSLSGSFPSLANLSSLKTAYLGTNKFTSVSSAAFSGLTSLQELYFDHNSDLSQWEFPSELTQSSSLNTLDLTSAMITGNLPDIFGNLPSLTIVRLSFNNLSGGLPNSLAASSIQNLWLNNQQSGPGFTGSIAVISKMTYLTQVWLQNNHFTGPIPDFSQCKNLFDLQLRDNQFTGVVPDSLMSMSSLKNVSLGNNVLQGPVPVSSSGGTIDVKGLNSFCLDKPGPCDDRVMVLLKIAEGFGYPIQFANSWKGNDPCQDWQSVLCSGGKITTLNFGKRNLQGTISPAFANLTDLNRLILSGNNLTGSIPQSLTTLTQLETLDVSNNNLSGKVPEFSPKVKLVTDGNVLLGKDPGSGGETPGSSPGGSGKGTALSPGGIAGIVIVVVLFVAVVLFVCCKCYSRKRFRKFSRVSSPENRQGNVKLDLASVSNGYGGLPSESHSQSSGDHSDLYGFDGGSGGNAIISIHVLRQVTNDFSDDNILGRGGFGIVYKGELPDGTKIAVKRMISVAMGSKGLNEFQAEISVLTKVRHRHLVALLGYCINGNERLLVYEHMPQGTLTQHLFECEEHGYTPLTWKQRLAIALDVGRGIEYLHSLAQQSFIHRDLKPSNILLGNDMRAKVADFGLVKNAPDGNYSLETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGKKALDDSVPDERSHLVTWFRRVLINKENVPKTIDQTLNPDEETMLSIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPSIDTDESGYGVELNLPRALQRWQDNEGTSTSMFNDLSISQTQSSLNSKPPFADSFGSTDCR 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05494 910 FunFam Leucine-rich repeat receptor-like kinase 318 441 - -
Vivi5g05494 910 FunFam Receptor-like kinase TMK4 19 314 - -
Vivi5g05494 910 MobiDBLite consensus disorder prediction 889 910 - -
Vivi5g05494 910 ProSitePatterns Serine/Threonine protein kinases active-site signature. 689 701 IPR008271 GO:0004672|GO:0006468
Vivi5g05494 910 SUPERFAMILY L domain-like 39 429 - -
Vivi5g05494 910 Pfam Leucine rich repeat 82 138 IPR001611 GO:0005515
Vivi5g05494 910 Pfam Leucine rich repeat 360 417 IPR001611 GO:0005515
Vivi5g05494 910 Gene3D Ribonuclease Inhibitor 318 441 IPR032675 -
Vivi5g05494 910 PRINTS Leucine-rich repeat signature 83 96 - -
Vivi5g05494 910 PRINTS Leucine-rich repeat signature 404 417 - -
Vivi5g05494 910 MobiDBLite consensus disorder prediction 439 459 - -
Vivi5g05494 910 Gene3D Phosphorylase Kinase; domain 1 543 641 - -
Vivi5g05494 910 ProSiteProfiles Protein kinase domain profile. 564 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05494 910 Pfam Leucine rich repeat N-terminal domain 25 54 IPR013210 -
Vivi5g05494 910 Pfam Leucine rich repeat N-terminal domain 322 355 IPR013210 -
Vivi5g05494 910 Gene3D Ribonuclease Inhibitor 23 310 IPR032675 -
Vivi5g05494 910 FunFam receptor protein kinase TMK1 524 641 - -
Vivi5g05494 910 Gene3D Transferase(Phosphotransferase) domain 1 642 858 - -
Vivi5g05494 910 FunFam receptor protein kinase TMK1 642 859 - -
Vivi5g05494 910 PANTHER OSJNBA0070M12.3 PROTEIN 6 910 - -
Vivi5g05494 910 SMART serkin_6 564 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05494 910 SUPERFAMILY Protein kinase-like (PK-like) 551 853 IPR011009 -
Vivi5g05494 910 CDD STKc_IRAK 570 843 - -
Vivi5g05494 910 ProSitePatterns Protein kinases ATP-binding region signature. 570 592 IPR017441 GO:0005524
Vivi5g05494 910 Pfam Protein tyrosine and serine/threonine kinase 568 838 IPR001245 GO:0004672|GO:0006468
Vivi5g05494 910 ProSiteProfiles Leucine-rich repeat profile. 82 104 IPR001611 GO:0005515
Vivi5g05494 910 SMART LRR_typ_2 404 426 IPR003591 -
Vivi5g05494 910 SMART LRR_typ_2 380 403 IPR003591 -
Vivi5g05494 910 SMART LRR_typ_2 80 102 IPR003591 -
Vivi5g05494 910 SMART LRR_typ_2 103 126 IPR003591 -
Vivi5g05494 910 SMART LRR_typ_2 177 200 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05494 Vivi-Chr5 157917298 157921043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05494 43 851 Receptor kinase-like Gene Family AT5G49660 29.574 3.01e-91 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vivi5g05494 PK_Tyr_Ser-Thr 8.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05494 K00924 - gmx:100286794 1174.07