LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g05479	ATGGATGCTGCGCCGCCCTCCTCATCCGCGGCCGCAGGAAATGGAGGAGGTCCGGCGCCGTTTCTCCAGAAGACGTATGACATGGTTGATGATTCTTCCACCGACGAGATCGTCTCCTGGGGCTCTAACAACTGCAGCTTCATCGTTTGGAACAATACCGAATTCGCTCGCCTTCTCCTCCCGACGTACTTCAAGCACAGCAATTTCTCCAGCTTCATCCGTCAGCTCAATACCTATGGATTTCGAAAAGTACATTCTGAGCGTTGGGAGTTTGCTAATGAAGAATTTATAAGAGGACAAAAGCATCTTCTGAAGAATATACACCGCAGGAAACCTATACACAGTCATAGTCATCCTCCGGTTTCTGTTGTAGATCCTGAAAGAGCAGCATTTGCCGAGGAACTCGATAAACTCTCGCGCGAGAAAAATTCTCTTGAATCCAATCTCTTAAACTACAAACAGCATCAATCAACAACAAAGCTTCAGATGGAAGATTTTTTCCATCGATTGGATGGTATAGAGAAGAGGCAGACAAATTTGCTGAGCTTTTTTGAGAAGGCTCTTCAGAATCCTTCTTTTGTTGATCAACTTTCGCGCAAAATCGAATCCATGGATATGGCGGCATATAATAAGAAAAGGCGACTGCCTCAGGTTGATCATGTGCAACCTGTTGCTGAAGGTAGCTTGGTTGACAATCATAGTAATTTTAGACTGGAATTTGGAAATGTTATCCATCAAGATTTCTCGAGCAAACTCAGGCTGGAATTGTCACCAGCTGTCTCGGATATGAACTTGGTATCAGGTAGCACACAGGGTTCAAACGAAGGTGAGGAAAGCCTGCAGAAGAACCCGTCTGAAGGAGAACTGAATGGAATGCAAACAAGAACTGGCCTTGCTTTTGCACCTGAAACACTAGAGCTTGCAGATACTGGGACATCTTTTACTTTTAATATGGATTCGTGTTTATCACGAAGAGCAACAGCTACTGAGAGCACAAATCCTCACTCCCTGGAGCCAAGTAGTGAAGAAGGTGATAGTCATATATCCTGCCAACTAAATTTAACTCTGGCATCTTGTCCATTGGAATTCAACAGGAATTCATACTCGGCCAGATCACCCCAGATAGATTGTCAAGAAATTGCCGAGTCAATAGTTAATGCCAATGGTAAAGTATCAGAAAATGGAGTTTCCTTAAACCGGGTTGTGGCTAATGAGGCTATCAATTTAGCTTCACCGCAGGAAGCTTCAGGCAATGGCCAAGTCAAACCAGCTGCTCCACGTCGAGTGAATGACGTCTTTTGGGAACAATTCCTTACTGAAAGACCAGGCTGTTCAGACAATGAAGAGGCAATATCCAACTATCGAGCAAATCCATATGACGAGCAAGAGGAAGGGCGGTCAGTTCATAGAATCTCTAGTACCTCCAAGAACATGGATAATCTCACACTCTAA	1452	0.4435	MDAAPPSSSAAAGNGGGPAPFLQKTYDMVDDSSTDEIVSWGSNNCSFIVWNNTEFARLLLPTYFKHSNFSSFIRQLNTYGFRKVHSERWEFANEEFIRGQKHLLKNIHRRKPIHSHSHPPVSVVDPERAAFAEELDKLSREKNSLESNLLNYKQHQSTTKLQMEDFFHRLDGIEKRQTNLLSFFEKALQNPSFVDQLSRKIESMDMAAYNKKRRLPQVDHVQPVAEGSLVDNHSNFRLEFGNVIHQDFSSKLRLELSPAVSDMNLVSGSTQGSNEGEESLQKNPSEGELNGMQTRTGLAFAPETLELADTGTSFTFNMDSCLSRRATATESTNPHSLEPSSEEGDSHISCQLNLTLASCPLEFNRNSYSARSPQIDCQEIAESIVNANGKVSENGVSLNRVVANEAINLASPQEASGNGQVKPAAPRRVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQEEGRSVHRISSTSKNMDNLTL	483

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g05479	483	Pfam	HSF-type DNA-binding	21	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi5g05479	483	PRINTS	Heat shock factor (HSF) domain signature	72	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi5g05479	483	PRINTS	Heat shock factor (HSF) domain signature	21	44	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi5g05479	483	PRINTS	Heat shock factor (HSF) domain signature	59	71	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi5g05479	483	MobiDBLite	consensus disorder prediction	456	483	-	-
	Vivi5g05479	483	Coils	Coil	128	155	-	-
	Vivi5g05479	483	SMART	hsfneu3	17	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi5g05479	483	FunFam	Heat shock transcription factor 1	14	111	-	-
	Vivi5g05479	483	Gene3D	-	16	111	IPR036388	-
	Vivi5g05479	483	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	10	274	IPR027725	-
	Vivi5g05479	483	MobiDBLite	consensus disorder prediction	265	291	-	-
	Vivi5g05479	483	SUPERFAMILY	"Winged helix" DNA-binding domain	17	110	IPR036390	-
	Vivi5g05479	483	ProSitePatterns	HSF-type DNA-binding domain signature.	60	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g05479	Vivi-Chr5	157819772	157823244	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi5g05479	21	483	HSF	AT4G13980	54.274	8.96e-160	459

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vivi5g05479		HSF_DNA-bind	2.3e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g05479	K09419		-	gmx:100786408	729.939