Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05469 ATGCGTTGTTATGGCTTATCAATCCCCGGAAGCGATCATCGCTTCTTCCTTCCAACCCTTACTCCGCCACTATCCCTCCGTCCTACAACAACCGTATCCGTAACCCGCGTAACATTCGGGTCGGGTTTTCCGAAACTGAGAGCAACCTTCAACGACGGCGTTGTGGCGGAGGAACTGAGTTTCTATGATTTACTAGGGATACCGGAATCTGGTTCGTTGAATGAGATAAAAAGTGCGTATAAACAGCTTGCGAGAAAGTATCATCCGGATGTTTCGCCGCCGGATAGGGTGGAGGAGTATACGAAGAAGTTTATTCAGGTTCATGAGGCGTATGAGACGCTGTCTGATCCTTCTAGGAGGATTATGTATGATCAGGATATGGCTAGAGGTGTTCATCTCGCGTTTAATGCCAGGAAACGATATAATCGCTCCGATCAGGGGAATGAACAAAAAGATGAATGGAAAACGCGTTGGCAGTCTCAACTCTCTGGTCTGAAGAGAAGAAGTGACAGCAAGGTTGCTGCTAAGAACATGTCATGGGCTGCTCGAATGCGCCAGCAGAAAGAGAAGGAAATGTGA 579 0.4767 MRCYGLSIPGSDHRFFLPTLTPPLSLRPTTTVSVTRVTFGSGFPKLRATFNDGVVAEELSFYDLLGIPESGSLNEIKSAYKQLARKYHPDVSPPDRVEEYTKKFIQVHEAYETLSDPSRRIMYDQDMARGVHLAFNARKRYNRSDQGNEQKDEWKTRWQSQLSGLKRRSDSKVAAKNMSWAARMRQQKEKEM 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05469 192 PRINTS DnaJ domain signature 99 119 IPR001623 -
Vivi5g05469 192 PRINTS DnaJ domain signature 62 80 IPR001623 -
Vivi5g05469 192 PRINTS DnaJ domain signature 80 95 IPR001623 -
Vivi5g05469 192 MobiDBLite consensus disorder prediction 142 156 - -
Vivi5g05469 192 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 56 190 - -
Vivi5g05469 192 FunFam Chaperone protein dnaJ 20, chloroplastic 47 156 - -
Vivi5g05469 192 Gene3D DnaJ domain 58 179 IPR036869 -
Vivi5g05469 192 SMART dnaj_3 59 119 IPR001623 -
Vivi5g05469 192 ProSitePatterns Nt-dnaJ domain signature. 104 123 IPR018253 -
Vivi5g05469 192 CDD DnaJ 61 116 IPR001623 -
Vivi5g05469 192 Pfam DnaJ domain 61 124 IPR001623 -
Vivi5g05469 192 ProSiteProfiles dnaJ domain profile. 60 127 IPR001623 -
Vivi5g05469 192 MobiDBLite consensus disorder prediction 142 192 - -
Vivi5g05469 192 SUPERFAMILY Chaperone J-domain 56 131 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05469 Vivi-Chr5 157680384 157683505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05469 56 124 C2H2 Transcription Factor Family AT1G74250 40.278 1.04e-07 49.3