Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05446 ATGGCAGGGGTTTCGCTCCAGTGCGGTGATTGCGGTACTCTCTTGAAATCGGTCGAAGAAGCTCAAGAACACGCCGAGCTCACTTCCCACTCCAATTTCTCCGAATCCACCGAACCCGTTCTAAATCTCGTTTGCTCCACTTGCTCCAAGCCCTGCCGATCCAAAACCGAGAGTGATTTACACACCAAGAGAACTGGACACACTGGGTTTGTTGATAAGACTGCTGAAGCTGCGAAACCAATAAGTTTAGAGGTTCCTAAGGGGGACTCAGAGGGTGGAACCAGTGATCAAAATGAAGAAATGGTTGTTCCCGAAGTTGATAAAACTCTGCTTGAGGAACTTGAATCAATGGGCTTTTCAACAGCTCGTGCAACAAGGGCACTTCATTTCTCTGGTAATGCTAGCCTCGAGGCTGCTGTAACTTGGATAGAAAGCCATGAGAATACGCCTGACATAGATGAGATGCCCTTGGTACCTGCTGTCAGTAAAACTAAGGCTACTAAACCCTCTCTTACCCCAGAAGAAACGAATGCCATACTAAAGGAACTAAGGGAGAAGGCTCGCAAGAAGAAAGAAGAAGAAGAGAAGAGAACAGAGAGAGAAAGAGAAAAGGAAAGAATTCGAGTTGGCAAGGAGTTGCTTGAAGCAAAGAGGATTGAAGAAGACAATGAGAGAAAACGGTTGTTAGCTTTGAGAAAAGCAGAGAAAGAGGAAGAGAGAAGGGCTAGAGAAAAAATCAGGCAAAAGTTGGAAGAAGACAAGGCAGAGAGGAGGCGAAAACTTGGTTTGCCTGCAGAGGACCCTTCGACAGTCAAACCTTCAACAACTGTTGTAGAGGAGAAAAAGAGTTTCCTGCCAATTAGGCCTGCCACAAAAACTGAACAAATGAGAGAATGCTTGCGTTCTCTCAAGCAGAACCACAAGGAGGATGATGCCAGAGTGAAAAGAGCTTTCCAAACTCTTCTAACATATGTGGGGAATGTTGCCAGAAATCCCGATGAAGAAAAATTCAGGAAAATTCGCCTTAGTAACGCAGCTTTTCAGGATAGAGTTGGTGCTTTGAAAGGAGGCATTGAATTCCTTGAAATTTGCGGTTTTGAGAAGATCGATGGTGGTGAAATTTTGTTTTTGCCTAGGGACAAGGTTGAGATTCCAGTCCTGAATTCTGCTGGATCTGAACTAGACTCTGCAATAAAGAATCCCTTTTTCGGAGTTCTTTAG 1221 0.4472 MAGVSLQCGDCGTLLKSVEEAQEHAELTSHSNFSESTEPVLNLVCSTCSKPCRSKTESDLHTKRTGHTGFVDKTAEAAKPISLEVPKGDSEGGTSDQNEEMVVPEVDKTLLEELESMGFSTARATRALHFSGNASLEAAVTWIESHENTPDIDEMPLVPAVSKTKATKPSLTPEETNAILKELREKARKKKEEEEKRTEREREKERIRVGKELLEAKRIEEDNERKRLLALRKAEKEEERRAREKIRQKLEEDKAERRRKLGLPAEDPSTVKPSTTVVEEKKSFLPIRPATKTEQMRECLRSLKQNHKEDDARVKRAFQTLLTYVGNVARNPDEEKFRKIRLSNAAFQDRVGALKGGIEFLEICGFEKIDGGEILFLPRDKVEIPVLNSAGSELDSAIKNPFFGVL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05446 406 CDD UBA_PUB_plant 105 153 - -
Vivi5g05446 406 CDD PUB_UBA_plant 300 406 - -
Vivi5g05446 406 SMART PGNneu 316 379 - -
Vivi5g05446 406 PANTHER F13M7.16 PROTEIN 1 406 - -
Vivi5g05446 406 SUPERFAMILY PUG domain-like 288 402 IPR036339 -
Vivi5g05446 406 SMART uba_6 107 145 IPR015940 -
Vivi5g05446 406 Coils Coil 219 256 - -
Vivi5g05446 406 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Vivi5g05446 406 Pfam PUB domain 313 383 IPR018997 -
Vivi5g05446 406 SUPERFAMILY UBA-like 93 159 IPR009060 GO:0005515
Vivi5g05446 406 Gene3D - 89 161 - -
Vivi5g05446 406 MobiDBLite consensus disorder prediction 253 280 - -
Vivi5g05446 406 Coils Coil 176 208 - -
Vivi5g05446 406 MobiDBLite consensus disorder prediction 185 205 - -
Vivi5g05446 406 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Vivi5g05446 406 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 105 146 IPR015940 -
Vivi5g05446 406 Gene3D - 289 396 - -
Vivi5g05446 406 Pfam UBA/TS-N domain 111 143 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05446 Vivi-Chr5 157505087 157511103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05446 89 406 C2H2 Transcription Factor Family AT1G04850 75.938 2.70e-146 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05446 K24348 - gmx:100779218 603.208