Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05442 ATGGATGATGATATCAACAAACAGTTATACAAAGAATTCCATGCAGTGCCTAGTTACATATTAGGCACGGTTCTACGTGACATGAGAAATTGTGCAAGAGAAATGGTTGCACTGAATTCTGAAAAACGTGAACTAATGGAGATGAATGTGTTGCTTCGTATTGTTACCACGATAGACGAAGATCATTATAATTGTGTTGGTCGACAAAATGTGGGCTTGCCAGCAAGATTGGATTTTGATACAACTTCTTCAAACTCCAAAGATCATTGTTCAATTTGTTTCGAAGAGTTTCGCAATGCATCGTGGAGTGAACTATTTTACACAAGATGTTCTCATGTTTTTCATAGAGAATGTATTGCAAAATGGATCAATCGATGCGTCAATGGTGCACGATCTTATTCTTGTCCATTGTGTCGATGTGAAATTATATGA 432 0.3681 MDDDINKQLYKEFHAVPSYILGTVLRDMRNCAREMVALNSEKRELMEMNVLLRIVTTIDEDHYNCVGRQNVGLPARLDFDTTSSNSKDHCSICFEEFRNASWSELFYTRCSHVFHRECIAKWINRCVNGARSYSCPLCRCEII 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05442 143 PANTHER RING ZINC FINGER PROTEIN-RELATED 79 142 - -
Vivi5g05442 143 Pfam Ring finger domain 89 139 IPR001841 -
Vivi5g05442 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 143 IPR013083 -
Vivi5g05442 143 ProSiteProfiles Zinc finger RING-type profile. 90 139 IPR001841 -
Vivi5g05442 143 SMART ring_2 90 138 IPR001841 -
Vivi5g05442 143 SUPERFAMILY RING/U-box 89 142 - -
Vivi5g05442 143 Coils Coil 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05442 Vivi-Chr5 157480250 157480681 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05442 80 139 C3H Transcription Factor Family AT4G30370 33.333 1.58e-07 46.6